BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF05RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig976 1316 0.0
>3x_Contig976
Length = 3865
Score = 1316 bits (664), Expect = 0.0
Identities = 753/778 (96%), Gaps = 4/778 (0%)
Strand = Plus / Plus
Query: 48 cagaagagccaaaagacctcttaggatttgtgctgtggaaaaagtggtggtcaccttgct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2643 cagaagagccaaaagacctcttaggatttgtgctgtggaaaaagtggtggtcaccttgct 2702
Query: 108 tcaaggatttaatgagaaattttaagattacagctttagtgttgagaatttacgtgaagg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2703 tcaaggatttaatgagaaattttaagattacagctttagtgttgagaatttacgtgaagg 2762
Query: 168 aaagtttgacagtacttacccgtcaaagagaattggttttacaacgtgccagggaaacat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2763 aaagtttgacagtacttacccgtcaaagagaattggttttacaacgtgccagggaaacat 2822
Query: 228 gggacagagaggctgctaatgatcttcctgacggagagggagatattgacatgggtgtca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2823 gggacagagaggctgctaatgatcttcctgacggagagggagatattgacatgggtgtca 2882
Query: 288 atatgctattaccaccaggaggaactgtggctgaagaaactgataacaatgataataata 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2883 atatgctattaccaccaggaggaactgtggctgaagaaactgataacaatgataataata 2942
Query: 348 tagatttgaggctcttcttacctcccggaaacgaacagaatagagaaactccggatgatc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2943 tagatttgaggctcttcttacctcccggaaacgaacagaatagagaaactccggatgatc 3002
Query: 408 aaatcattgaggagtaactcaagttaagtgaagaaattagcacggagaaatatgatcgta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3003 aaatcattgaggagtaactcaagttaagtgaagaaattagcacggagaaatatgatcgta 3062
Query: 468 gtgtcgatgataatgataacaattataatactaataatactaatacaatttttcgacgcc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3063 gtgtcgatgataatgataacaattataatactaataatactaatacaatttttcgacgcc 3122
Query: 528 gttgtttggtcaatcgatatatgtagaaacccctatgtttgtgtctctgtttttatgtag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3123 gttgtttggtcaatcgatatatgtagaaacccctatgtttgtgtctctgtttttatgtag 3182
Query: 588 ttgacgtatttcgtcagaagtcaat-ttaaacctattagcaaacttcagccagacggagt 646
||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||
Sbjct: 3183 ttgacgtatttcgtcagaagtcaatattaaacctattagcaaactcaagcaagacggagt 3242
Query: 647 cgtcatcgatttgctgtatgaa-tcctttgctgttgagaattgtcgttgnaatgtctcta 705
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 3243 cgtcatcgatttgctgtatgaattcctttgctgttgagaattgtcgttgtaatgtctcta 3302
Query: 706 tttttgtattaagggngggttcaaagaattc-aaaatctcctttcctttctgatcaattc 764
|||||||||||| || || |||||| |||| |||||||||||||||||||||||||| |
Sbjct: 3303 tttttgtattaatggtggtttcaaaagattcaaaaatctcctttcctttctgatcaatcc 3362
Query: 765 attctttgaagtttaggccaagctcttatttagccattcttgtttattaaaaaagtca 822
| | |||||||| ||| ||||||| | |||| ||| | ||||||| ||||||||||
Sbjct: 3363 agttcttgaagttcagggcaagctcctcattaggcatgc-tgtttatgaaaaaagtca 3419
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8701
Number of Sequences: 1807
Number of extensions: 8701
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)