BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF06FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1160 0.0
>3x_Contig1791
Length = 39945
Score = 1160 bits (585), Expect = 0.0
Identities = 678/703 (96%), Gaps = 5/703 (0%)
Strand = Plus / Minus
Query: 84 taaccatgcatctacatgcgcggggtcttcttgcacagcagcttcgaaagccaatgcagc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266 taaccatgcatctacatgcgcggggtcttcttgcacagcagcttcgaaagccaatgcagc 3207
Query: 144 ttcacttagcttcgccccattttccattaggatacatccaatttcataggcatttggatt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3206 ttcacttagcttcgccccattttccattaggatacatccaatttcataggcatttggatt 3147
Query: 204 atgcatgtattggttatcattatcaaatctgtaaggtggaatatgtgttgctttaccagt 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3146 atgcatgtattggttatcattatcaaatctgtaaggtggaatatgtgttgctttaccagt 3087
Query: 264 catatagcgagcgtaatctttctcccattgagaatcacttgtttccaaattattatcagc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3086 catatagcgagcgtaatctttctcccattgagaatcacttgtttccaaattattatcagc 3027
Query: 324 cgtctccgcttgtaacttatcccagacttcttggaagtctgcttgatatccatcctccac 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3026 cgtctccgcttgtaacttatcccagacttcttggaagtctgcttgatatccatcctccac 2967
Query: 384 tactatctcctccttggtttcctctttattgtcctccatggtcaaattttcagccacagc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2966 tactatctcctccttggtttcctctttattgtcctccatggtcaaattttcagccacagc 2907
Query: 444 cttctccaaggcttcaaactgctcattccactgcttgtcagcgagaacaccatcatcact 503
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2906 cttctccaaggcttcaaactgctcattccactgcttgtcagcgagcacaccatcatcact 2847
Query: 504 ggacatttgcggtgtttgctgagacatgtgagaataattatgtaatgaagaaatacctgt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2846 ggacatttgcggtgtttgctgagacatgtgagaataattatgtaatgaagaaatacctgt 2787
Query: 564 atgcatcattcggcctcccgatccgggacatgccangcctgtatgaactcatagaatttg 623
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2786 atgcatca-tcggcctcccgatccgggacatgccaggcctgtatgaactcatagaatttg 2728
Query: 624 tgttgcttattctttc-acattnatgactttgctggctaaaccctgttggagaagatttg 682
|||||||||||||||| ||||| ||||| |||||||||||||||||| ||| |||| ||
Sbjct: 2727 tgttgcttattctttcaacattattgactctgctggctaaaccctgtt-gaggagatctg 2669
Query: 683 ctattataattcattaccccacctcctggaatgcttaaccggattgcctgctgaaatata 742
|||||| |||||||||||||| ||||||||||||| | | | || ||||||||| ||||
Sbjct: 2668 ctatta-aattcattaccccagctcctggaatgctgagctgtatcgcctgctgacatatt 2610
Query: 743 actgcttccacttatttgttttttttagtcccaaacgaggacc 785
||||||||||| ||| | ||| |||||||| |||||||||||
Sbjct: 2609 actgcttccac-tatcttgtttctttagtccaaaacgaggacc 2568
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6314
Number of Sequences: 1807
Number of extensions: 6314
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)