BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZF06RM1.SCF screened BAC_end
         (953 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1049                                                        1009   0.0  

>3x_Contig1049 
          Length = 4107

 Score = 1009 bits (509), Expect = 0.0
 Identities = 564/580 (97%), Gaps = 3/580 (0%)
 Strand = Plus / Plus

                                                                       
Query: 77  ttgggattgaaagggcaccctccgaacatatatataggatccttcttcacctttgccaat 136
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 17  ttgggattgaaagggcac--tccgaacatatatataggatccttcttcacctttgccaat 74

                                                                       
Query: 137 agtttttctctttgttttctcttctttaaattctcattggttgcttcatctttctcagga 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  agtttttctctttgttttctcttctttaaattctcattggttgcttcatctttctcagga 134

                                                                       
Query: 197 atgatttcttcgtcattggcaatatgcaacggctcttcagtctccgaaacagagtgcttg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atgatttcttcgtcattggcaatatgcaacggctcttcagtctccgaaacagagtgcttg 194

                                                                       
Query: 257 tcattaatggagatatacctgtttcctgtataagtttcgtcccagtaatccttaccatat 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tcattaatggagatatacctgtttcctgtataagtttcgtcccagtaatccttaccatat 254

                                                                       
Query: 317 gatcctcgaagtgtgttcttattgtgataattcgctctgctcaactgatggtaaccttct 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gatcctcgaagtgtgttcttattgtgataattcgctctgctcaactgatggtaaccttct 314

                                                                       
Query: 377 tcaaaactagcttgcaactgctctaatagagaatcataggttgcaagattcttaacaatg 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcaaaactagcttgcaactgctctaatagagaatcataggttgcaagattcttaacaatg 374

                                                                       
Query: 437 agttgatatatgtcatcctccgtcatcattggtttcctagcgtctattaatatccaaatc 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agttgatatatgtcatcctccgtcatcattggtttcctagcgtctattaatatccaaatc 434

                                                                       
Query: 497 gtggcagtttcttctcatattacgtatattattcagtcattaacgtttttaaccaaactt 556
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 435 gtggcagtttcttctcatattacgtatattattcagtcataaacgttttaaaccaaactt 494

                                                                       
Query: 557 ttgaagttgtctgaaatttttgtaacttaattatagtcaatgattttatttaacgatttc 616
           ||||||||||||||||| ||||||||||||| ||||||||||||||   | ||||| |||
Sbjct: 495 ttgaagttgtctgaaatatttgtaacttaatcatagtcaatgatttatataaacgaattc 554

                                                   
Query: 617 -caggtgaaagaaaagtagcaattttgcgacaaaccagct 655
             ||||||||||||  ||||||| ||||||||||||||||
Sbjct: 555 gaaggtgaaagaaagttagcaatattgcgacaaaccagct 594


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,497
Number of Sequences: 1807
Number of extensions: 14497
Number of successful extensions: 101
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)