BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF07FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1800 1273 0.0
>3x_Contig1800
Length = 38778
Score = 1273 bits (642), Expect = 0.0
Identities = 708/722 (98%), Gaps = 6/722 (0%)
Strand = Plus / Plus
Query: 86 cgttacccaaggaccagataataatcgaaggatgattgacatctcttaggacaagttggg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6969 cgttacccaaggaccagataataatcgaaggatgattgacatctcttaggacaagttggg 7028
Query: 146 aagctctgtctaagtacgcgacctcgtactctggattatctgataagtaatgggcattaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7029 aagctctgtctaagtacgcgacctcgtactctggattatctgataagtaatgggcattaa 7088
Query: 206 catcgtagagtttatttttagtatctggatattcagcctccaagttcgtatgacgattaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7089 catcgtagagtttatttttagtatctggatattcagcctccaagttcgtatgacgattaa 7148
Query: 266 atggctcttgaacaccatgagtttcaagatctgcctcgtcaatgacccagaagcccagct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7149 atggctcttgaacaccatgagtttcaagatctgcctcgtcaatgacccagaagcccagct 7208
Query: 326 tatcgaagaggtcatacaccttaggatggtttggataatgcgagttacgaacagcattga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7209 tatcgaagaggtcatacaccttaggatggtttggataatgcgagttacgaacagcattga 7268
Query: 386 tgttaaacttcttcattagaatcaagtccctaacaacaaaatctaatggcacagctctac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7269 tgttaaacttcttcattagaatcaagtccctaacaacaaaatctaatggcacagctctac 7328
Query: 446 cgaaccttggatggtgatcatgtctgttgacacctctaaagagaatgtctttgccattaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7329 cgaaccttggatggtgatcatgtctgttgacacctctaaagagaatgtctttgccattaa 7388
Query: 506 cagtaatgttaccgtccttcaactccacttgtctgaaaccaacatggtgcttaatagatt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7389 cagtaatgttaccgtccttcaactccacttgtctgaaaccaacatggtgcttaatagatt 7448
Query: 566 gaatcacactgccatcagatccaattaaatccaactggtacttgtacaaagtaggatttt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7449 gaatcacactgccatcagatccaattaaatccaactggtacttgtacaaagtaggatttt 7508
Query: 626 ctgcggtccaatgtttctggggccttgacgttgatcttgaaagctgtttcttcgttcttt 685
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7509 ctgcggtccaatg-ttctggggccttgacgttgatcttgaaagctgtttcttcgttcttt 7567
Query: 686 ttgggtgaagaaggaaataaattctttagtttgaaaagttcgtgtttccatttcttcttg 745
|| |||| ||||||||||||||||||||| ||||||| ||||||| ||| |||| || |
Sbjct: 7568 tt-ggtggagaaggaaataaattctttag-ttgaaaaagtcgtgttccca-ttctcctcg 7624
Query: 746 ttcaacaaagagcttgcattcgtaaactttagattcatctttcaggttcgtaaagggtga 805
|||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| ||||
Sbjct: 7625 ttcaacaaagagcttgca-tcgtaaactttagatccatc-ttcaggttcgtaaagtgtga 7682
Query: 806 aa 807
||
Sbjct: 7683 aa 7684
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6771
Number of Sequences: 1807
Number of extensions: 6771
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)