BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF08RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig851 1199 0.0
>3x_Contig851
Length = 3821
Score = 1199 bits (605), Expect = 0.0
Identities = 706/733 (96%), Gaps = 5/733 (0%)
Strand = Plus / Minus
Query: 43 gctttggaaattgcttctactttattggaagaaatttaagatattatatgctatatctaa 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2568 gctttggaaattgcttctactttattggaagaaatttaagatattatatgctatatctaa 2509
Query: 103 cgtaatgtacctatataattgttctgaacaaaattaccaaaatgcaatgaagataatcat 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2508 cgtaatgtacctatataattgttctgaacaaaattaccaaaatgcaatgaagataatcat 2449
Query: 163 ctatagtgatttgtttaattgttgttcatagatctttcatgaggatcatttaaaggccta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2448 ctatagtgatttgtttaattgttgttcatagatctttcatgaggatcatttaaaggccta 2389
Query: 223 taaggggtatattgctgttgagcagcagattgcccagattgttggaaatttgggaaagta 282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2388 gaaggggtatattgctgttgagcagcagattgcccagattgttggaaatttgggaaagta 2329
Query: 283 ttcattggttgtgacactggagtggtgtttggtgggaaaaattgtaggggcatgtttggt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2328 ttcattggttgtgacactggagtggtgtttggtgggaaaaattgtaggggcatgtttggt 2269
Query: 343 agtggtatattgctctggggtggaaacatttgtggctgggaagcaaacggttgttgaaac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2268 agtggtatattgctctggggtggaaacatttgtggctgggaagcaaacggttgttgaaac 2209
Query: 403 tgttgctggtactggaatattccttgctgctgggcaagtggttgattaggataacttgga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2208 tgttgctggtactggaatattccttgctgctgggcaagtggttgattaggataacttgga 2149
Query: 463 tattgaggttgataaaagcctccattgttgtatggaggttgttgattaccatacgccatt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2148 tattgaggttgataaaagcctccattgttgtatggaggttgttgattaccatacgccatt 2089
Query: 523 ggttgagaaaattgtgggttgtacatatgtgggaattcaggcggaaactgcattggatta 582
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2088 ggttgagaaaattgtgggttgtacatatgtgggaatccaggcggaaactgcattggatta 2029
Query: 583 gtttggactattgattttgaaagcggtcttttcttttttcggtcttctacaagaaatttt 642
||| | ||||||||||||||| |||||| |||| ||||||||||| ||||||||| |||
Sbjct: 2028 gttggaactattgattttgaatgcggtc-tttcatttttcggtctcttacaagaaa-ttt 1971
Query: 643 gcccctcagaacttgccttcttccgtatctcttgaattgacttctattttctctggaatt 702
| |||||||||| |||| ||||| ||||||| || |||||||||||||||||||| |||
Sbjct: 1970 gtccctcagaac-tgccatcttcggtatctc-tgtattgacttctattttctctgatatt 1913
Query: 703 tctttgaccattacttactgtggactttttactgtttgggaaaggatctttatttttgaa 762
|||| || || ||||||||||||||| ||||||| ||| |||||||||||||| |||||
Sbjct: 1912 tcttgaacgataacttactgtggacttgttactgtatggtaaaggatctttattcttgaa 1853
Query: 763 ggccagttttccc 775
|| ||||||||||
Sbjct: 1852 gg-cagttttccc 1841
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9259
Number of Sequences: 1807
Number of extensions: 9259
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)