BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZF09FM1.SCF screened BAC_end
         (941 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1794                                                        1338   0.0  

>3x_Contig1794 
          Length = 36744

 Score = 1338 bits (675), Expect = 0.0
 Identities = 737/755 (97%), Gaps = 2/755 (0%)
 Strand = Plus / Minus

                                                                         
Query: 88    agataagagggagcaagcttggttaaaggaacacgaaaaaaggaaaaagaaactgaagaa 147
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29671 agataagagggagcaagcttggttaaaggaacacgaaaaaaggaaaaagaaactgaagaa 29612

                                                                         
Query: 148   aagccattcataaacatgtcaatgtacgaattgaatatatcatttattcatctaatatac 207
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29611 aagccattcataaacatgtcaatgtacgaattgaatatatcatttattcatctaatatac 29552

                                                                         
Query: 208   aattaattaatgcattagttgaaatcatagatccaaatgaaatcaacattttgaagtttg 267
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29551 aattaattaatgcattagttgaaatcatagatccaaatgaaatcaacattttgaagtttg 29492

                                                                         
Query: 268   tgtactattataaaattgctttacaatatcaactctataaatccataacatactgcaaag 327
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29491 tgtactattataaaattgctttacaatatcaactctataaatccataacatactgcaaag 29432

                                                                         
Query: 328   attatgataatgaagatcacaacaccagtaatataatgccaagtaggtgcaaacgtgaat 387
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29431 attatgataatgaagatcacaacaccagtaatataatgccaagtaggtgcaaacgtgaat 29372

                                                                         
Query: 388   cttgaaaacattaataacaaagaccatgcaccgagaattaaggatatggataatgatatg 447
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29371 cttgaaaacattaataacaaagaccatgcaccgagaattaaggatatggataatgatatg 29312

                                                                         
Query: 448   aatatcatcgtcaaaatagaagtttcgttttctagttgtgtatcatcgttgagtgatttg 507
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29311 aatatcatcgtcaaaatagaagtttcgttttctagttgtgtatcatcgttgagtgatttg 29252

                                                                         
Query: 508   aacaaagatgtcatgataccaatggttacgcctgtagtcaaacaggatattagcaatgaa 567
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29251 aacaaagatgtcatgataccaatggttacgcctgtagtcaaacaggatattagcaatgaa 29192

                                                                         
Query: 568   gaaacatagaagaaagatatcacctggtcatgctcgaactcatatattgattctgaattt 627
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29191 gaaacatagaagaaagatatcacctggtcatgctcgaactcatatattgattctgaattt 29132

                                                                         
Query: 628   tgttcttcgagttcccaaaacttattcacgttgtttcttttcggagaaagagaaattagt 687
             ||||||||||||||||||||||||||||||| |||||||| || ||||  |||| | |||
Sbjct: 29131 tgttcttcgagttcccaaaacttattcacgtcgtttctttccgaagaagaagaagtaagt 29072

                                                                         
Query: 688   attggagtgtcagtgtctattgagttgtaggacttaactgcatctc-taattaagatttc 746
             || | ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct: 29071 atggaagtgtcagtgtctattgagttgtaggacttacctgcatctcttaataaagatttc 29012

                                                                         
Query: 747   ctagcttggacgtcgtcaattataccgaatgcaatttggaacttcgattagagatgatta 806
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  
Sbjct: 29011 ctagcttggacgtcgtcaattataccgaatgcaatttggaacttcgataagagatgatag 28952

                                                
Query: 807   atggcatttttgaatgatggggttaaatctgatga 841
             |||||| || |||||||| ||||||||||||||||
Sbjct: 28951 atggcaattatgaatgat-gggttaaatctgatga 28918


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8600
Number of Sequences: 1807
Number of extensions: 8600
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)