BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF09RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 1249 0.0
>3x_Contig1765
Length = 24733
Score = 1249 bits (630), Expect = 0.0
Identities = 671/682 (98%), Gaps = 2/682 (0%)
Strand = Plus / Minus
Query: 43 gcttgctgaattctgttaatgtaagcctttgaaatggcattccaacttctcatatattta 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17599 gcttgctgaattctgttaatgtaagcctttgaaatggcattccaacttctcatatattta 17540
Query: 103 gccaaacattggtcgacgcagttatcttgagaagcagcatatggagcattcagacatttc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17539 gccaaacattggtcgacgcagttatcttgagaagcagcatatggagcattcagacatttc 17480
Query: 163 tcaaaacagttctcagtgactttgttaactaactcggtagcattggcgatggctaattct 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17479 tcaaaacagttctcagtgactttgttaactaactcggtagcattggcgatggctaattct 17420
Query: 223 tgagagatttgagatttaagttgggtcttgacatcgctaggactggatgtggctggggta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17419 tgagagatttgagatttaagttgggtcttgacatcgctaggactggatgtggctggggta 17360
Query: 283 ccagatgatgaagagctaccaccaaagatcgaagttaaagccatatcttaatgtgttcta 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17359 ccagatgatgaagagctaccaccaaagatcgaagttaaagccatatcttaatgtgttcta 17300
Query: 343 tgatagattattgatccgatgcaatgttcagaggggcctggatgatagattatagctgtt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17299 tgatagattattgatccgatgcaatgttcagaggggcctggatgatagattatagctgtt 17240
Query: 403 aattgtagattgccaatggatatttcagtttatgctaaagcttcaaatcattagtttttt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17239 aattgtagattgccaatggatatttcagtttatgctaaagcttcaaatcattagtttttt 17180
Query: 463 ttttcaatatgaggaagaaacattccttcacatcgagcagcaatggaagggatagataac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17179 ttttcaatatgaggaagaaacattccttcacatcgagcagcaatggaagggatagataac 17120
Query: 523 tattgtttcagcccgtttcacaacctctcctttcctgcgatttaccgcgttattggaaga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17119 tattgtttcagcccgtttcacaacctctcctttcctgcgatttaccgcgttattggaaga 17060
Query: 583 tatgttttggagtttcccagagtgatttacttactaatatgaaccactgtccaagtactt 642
||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17059 tatgtttggaagttccccagagtgatttacttactaatatgaaccactgtccaagtactt 17000
Query: 643 gtcacacggagcatttatggtagtcgcatgattataattacgttactgtaccccaatctt 702
|||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct: 16999 gtcacacggagcatatat-gtagtcgcatgattatcattacgttactgtaccccaaactt 16941
Query: 703 a-ttcaacggacattaacaaat 723
| | |||| ||||| |||||||
Sbjct: 16940 agtacaacagacatcaacaaat 16919
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8989
Number of Sequences: 1807
Number of extensions: 8989
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)