BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF10FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1592 973 0.0
>3x_Contig1592
Length = 12307
Score = 973 bits (491), Expect = 0.0
Identities = 613/642 (95%), Gaps = 9/642 (1%)
Strand = Plus / Plus
Query: 86 tatgggatctgagtctccttccacttgttcattttcttgttcttccttcaaaatatcaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3141 tatgggatctgagtctccttccacttgttcattttcttgttcttccttcaaaatatcaag 3200
Query: 146 taacggatcatcataatcagggaacgcaagacctgtgtcaatgaagggtatttctggatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3201 taacggatcatcataatcagggaacgcaagacctgtgtcaatgaagggtatttctggatt 3260
Query: 206 ttgcatattacgcgacaccatattgctcagtggggtgttgaagttccaatacatcccgtc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3261 ttgcatattacgcgacaccatattgctcagtggggtgttgaagttccaatacatcccgtc 3320
Query: 266 agccttggccggactattcgtgttattagtggttgtgctatagttgttatccttctgttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3321 agccttggccggactattcgtgttattagtggttgtgctatagttgttatccttctgttt 3380
Query: 326 agtaattggtgaggcactgtccaagtccagatcaaacagctggtcagttctgaatcctag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3381 agtaattggtgaggcactgtccaagtccagatcaaacagctggtcagttctgaatcctag 3440
Query: 386 ttgaccaaaactaggttgttgccaagcagaaacacttgaatcgttatccaaaccattcgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3441 ttgaccaaaactaggttgttgccaagcagaaacacttgaatcgttatccaaaccattcgg 3500
Query: 446 cgttgcttgagaatgagagctatcattgtattgtttatcaacactgaactgattggatac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3501 cgttgcttgagaatgagagctatcattgtattgtttatcaacactgaactgattggatac 3560
Query: 506 cgcatttacaggaatcgtggttattcaaagcagaagcggatgcagagttatgttaaagtg 565
|||||||||| ||||||||||||||||||||||| ||||||||||||| |||| | |||
Sbjct: 3561 cgcatttaca-gaatcgtggttattcaaagcagaggcggatgcagagtcatgtagaggtg 3619
Query: 566 caaaggaggacagaaccttgctggtaattttatttattggtgngaataggaaatattaac 625
|| |||| |||||| |||||||| |||||||| |||||| || || || | |||||||||
Sbjct: 3620 cagaggaagacagatccttgctgttaatttta-ttattgttgtgatta-gtaatattaac 3677
Query: 626 actttctattggaatttcggtttcaggaaggtctgaaaaggaccgtgttaaaaccagggc 685
| || ||||||| |||||||||||||| ||||||||| ||||| ||||| ||| ||||||
Sbjct: 3678 a-ttactattgg-atttcggtttcagg-aggtctgaagaggacggtgttgaaa-cagggc 3733
Query: 686 ttgctttttggtattgggttaaaattttgggccgcatgccat 727
|||| ||||||||||||||| | | |||| ||||||||||||
Sbjct: 3734 ttgc-ttttggtattgggtt-agactttgtgccgcatgccat 3773
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7859
Number of Sequences: 1807
Number of extensions: 7859
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)