BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF10RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1233 0.0
>3x_Contig1515
Length = 8855
Score = 1233 bits (622), Expect = 0.0
Identities = 698/714 (97%), Gaps = 7/714 (0%)
Strand = Plus / Plus
Query: 45 gcttgtgctgttgcaatgctttataaaca-catcggaatgtgtgttgtagataaagatta 103
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 3025 gcttgtgctgttgcaatgctttaaaaacaacatcggaatgtgtgttgtagataaagatta 3084
Query: 104 tcggactgattacaagaaatataacgttcaggaattgttcgaaatgaagcataaaaataa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3085 tcggactgattacaagaaatataacgttcaggaattgttcgaaatgaagcataaaaataa 3144
Query: 164 agaaactactcctactactgcagagtctgccccggcttctacccaaagcaatactagcaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3145 agaaactactcctactactgcagagtctgccccggcttctacccaaagcaatactagcaa 3204
Query: 224 atagacccttttgtataatgtattaatttcgctacattcaattaaatacttaacgtacgg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3205 atagacccttttgtataatgtattaatttcgctacattcaattaaatacttaacgtacgg 3264
Query: 284 tataaatactccgttggttgttgccaagcaagccaatcacttgacgtagttgggaacaat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3265 tataaatactccgttggttgttgccaagcaagccaatcacttgacgtagttgggaacaat 3324
Query: 344 cccattgaattcaacttatgcaaacctattcccatgaggattaattggtatatcacgtac 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3325 cccattgaattcaacttatgcaaacctattcccatgaggattaattggtatatcacgtac 3384
Query: 404 ataatcatggctgcaactacaggcggggttacatcattatctttgttgattaaatgttga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3385 ataatcatggctgcaactacaggcggggttacatcattatctttgttgattaaatgttga 3444
Query: 464 aattttgacttaactcctaagatacttttgatgggatttgagaccaacatcacagcagtc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3445 aattttgacttaactcctaagatacttttgatgggatttgagaccaacatcacagcagtc 3504
Query: 524 attataggaataatttgcaagctgttaccagacatatatgacataattatatttcatggg 583
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3505 attataggaataatttgcaagctgttaccagacatatatgacataattata-ttcatggg 3563
Query: 584 aacagatttgaggaggctcagaagatatctgccatgccccgttctgcagtgaagtttgct 643
||||||||||| |||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct: 3564 aacagatttga-gaggctcagaagatatctgccatg-cccgttctgcagtgagtttggct 3621
Query: 644 atacgattttgagcgttatgatctatcaccttagggggcttctgtcctttgatcttatag 703
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| | |||
Sbjct: 3622 atacgattttgagcgtcatgatctatcaccttagggggcttctgtccttcgatc-tctag 3680
Query: 704 -ttctttattccaaacggatccggcaattta-cacccttgacactttttcgcct 755
|||||||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct: 3681 tttctttattccaaacggatccggcaatttaccaccattgacactatttcgcct 3734
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6883
Number of Sequences: 1807
Number of extensions: 6883
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)