BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF11FM1.SCF screened BAC_end
(1085 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 607 e-173
>3x_Contig1806
Length = 53694
Score = 607 bits (306), Expect = e-173
Identities = 366/386 (94%)
Strand = Plus / Minus
Query: 112 aaatccaattggtgatagggtattcacagaattgtgttactcaaaaaatcgctgtgagca 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36266 aaatccaattggtgatagggtattcacagaattgtgttactcaaaaaatcgctgtgagca 36207
Query: 172 ataaagtatgtgtttggtattttcaattatgcccaatcgaccacctataagagtaatatt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36206 ataaagtatgtgtttggtattttcaattatgcccaatcgaccacctataagagtaatatt 36147
Query: 232 acccattttgatcctctacagcggcttcccggtattattattaggtactgatttacttct 291
|||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36146 acccatcactaattactacagcggcttcccggtattattattaggtactgatttacttct 36087
Query: 292 caaaatatgggaagtgaaattctatcactgggtttaatcgtatttgaaaaatatcattcg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 36086 caaaatatgggaagtgaaattctatcactgggtttaatcgtatttgaaaaatatcatccg 36027
Query: 352 ctccattagaaccctttgccaatgtttattgtactatgggtgatatataaacgttaattg 411
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 36026 ctccagtagaaccctttgccaatgtttattgtactattggtgatatataaacgttaattg 35967
Query: 412 aattgaagatcttatttgcattcattaaaagagacaccatttaccttctggtaatttcga 471
||||||||||||||| |||||||||||||||||||||||||||| | ||| |||||| ||
Sbjct: 35966 aattgaagatcttatatgcattcattaaaagagacaccatttacttcctgttaattttga 35907
Query: 472 gtagtttatttttgttatcggtcatt 497
||||| ||||||||| ||| |||||
Sbjct: 35906 gtagtaaatttttgttttcgttcatt 35881
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,426
Number of Sequences: 1807
Number of extensions: 13426
Number of successful extensions: 270
Number of sequences better than 1.0e-20: 1
length of query: 1085
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1069
effective length of database: 10,329,639
effective search space: 11042384091
effective search space used: 11042384091
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)