BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF11RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1080 0.0
>3x_Contig1711
Length = 15491
Score = 1080 bits (545), Expect = 0.0
Identities = 642/668 (96%), Gaps = 5/668 (0%)
Strand = Plus / Minus
Query: 44 cttgtaatttgattgcgatttctggatccaagaagtcataaacgttcttaccatctaaga 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3777 cttgtaatttgattgcgatttctggatccaagaagtcataaacgttcttaccatctaaga 3718
Query: 104 tttctggcatgacatcgttcttccattcatcgtcttccaatagatacttgtccttcaaat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3717 tttctggcatgacatcgttcttccattcatcgtcttccaatagatacttgtccttcaaat 3658
Query: 164 taacgttgtatacaccggccccaccgttttcgatttcaatttctttagccaattttcttc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3657 taacgttgtatacaccggccccaccgttttcgatttcaatttctttagccaattttcttc 3598
Query: 224 tgtttggatcttctggatcatatttcttcatcttagcgatggcttctggaatatatggag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3597 tgtttggatcttctggatcatatttcttcatcttagcgatggcttctggaatatatggag 3538
Query: 284 ttctgtcaataccatcatcacgcttttgaggttgagcgacgtggatcttgtttaagacgt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3537 ttctgtcaataccatcatcacgcttttgaggttgagcgacgtggatcttgtttaagacgt 3478
Query: 344 tagtgattctagcttgagattttagcttgttttcaattctggaagccaacaacttttcac 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3477 tagtgattctagcttgagattttagcttgttttcaattctggaagccaacaacttttcac 3418
Query: 404 aagccttgtttctaacagccataacgttatcttcttcatgacaagaagtggtcatgattt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3417 aagccttgtttctaacagccataacgttatcttcttcatgacaagaagtggtcatgattt 3358
Query: 464 caacacctggaactttcaaaacagtatccanaagtttcttacgttctttgtctaaatctt 523
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 3357 caacacctggaacttccaaaacagtatccaaaagtttcttacgttcttcgtctaaatctt 3298
Query: 524 -caggtttaatgatatcagtcttggttatgacgaccatgacggatttattggc-aacaag 581
||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct: 3297 acaggtttaatgatatcagtcttgttaatgacgaccatgacggatttattggcaaacaat 3238
Query: 582 ggtttgatcgaatgg-attatttgacttgagcttcaataga-aaaacacactgttctgat 639
||||||||||||||| || |||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 3237 ggtttgatcgaatggaataatttgacttgagcttcaatagagaaaccacactgttctgat 3178
Query: 640 -gattcattgaattcataacagtagaacgcaaatgtaccattacctaattggattgcttt 698
||| ||| | | ||||||||||||||||||||| | || | ||| |||||||| ||
Sbjct: 3177 agatccatgaagtacataacagtagaacgcaaatgagcaatagcataaatggattgcatt 3118
Query: 699 tcgacgtt 706
||||||||
Sbjct: 3117 tcgacgtt 3110
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8412
Number of Sequences: 1807
Number of extensions: 8412
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)