BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF12RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1301 1118 0.0
>3x_Contig1301
Length = 6951
Score = 1118 bits (564), Expect = 0.0
Identities = 678/706 (96%), Gaps = 8/706 (1%)
Strand = Plus / Minus
Query: 44 gcttgntacagagctgcggcttttttaatgatgtagttctttatagtatcaaaatcgatc 103
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1937 gcttgttacagagctgcggcttcgg-aatgatgtagttctttatagtatcaaaatcgatc 1879
Query: 104 tttccattctctaaactgttaggagggaactgaaaccgtaccttcgacccctctgttgga 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1878 tttccattctctaaactgttaggagggaactgaaaccgtaccttcgacccctctgttgga 1819
Query: 164 tgaaaaattgtatagaa-acagtgtgtatgggtacaaacccatcgaatgtgctggt-ana 221
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1818 tgaaaaagcgtatagaacacagtgtgtatgggtacaaacccatcgaatgtgctggtcata 1759
Query: 222 tctcatggatgcgtgtgcagtgctgctggctgcattgtgttgtattttgcagatggacat 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1758 gctcatggatgcgtgtgcagtgctgctggctgcattgtgttgtattttgcagatggacat 1699
Query: 282 caattttgaagttagctataatacggaaaaatcacaattcttgatcacaatccattttgt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1698 caattttgaagttagctataatacggaaaaatcacaattcttgatcacaatccattttgt 1639
Query: 342 cggtgaagaggatagtactattgaactgttcagcttcaacgtcagtatttaaaccaatat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1638 cggtgaagaggatagtactattgaactgttcagcttcaacgtcagtatttaaaccaatat 1579
Query: 402 tgaacgaaatctaattgaatttaattctgttatatagagcggcattttctaccctataat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1578 tgaacgaaatctaattgaatttaattctgttatatagagcggcattttctaccctataat 1519
Query: 462 caagcttttatccccgattgctccattgatattattggtgacagtttaagtcaataggat 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1518 caagcttttatccccgattgctccattgatattattggtgacagtttaagtcaataggat 1459
Query: 522 tgtagtcttgacatgtttggatactatgaggtcctcactaaacaacaatggttagc-aaa 580
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 1458 tgtagtcttgacatgtttggatactatgaggtcctcactaaacaacaatgg-tagcaaaa 1400
Query: 581 agcaacaaagtattaagacaaaagttgttgtgatatatatatattgatttaagacctttt 640
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1399 agcaacaaagtattaagacaaaagttgttgtgatatatatata-tgatttaagacctttt 1341
Query: 641 attactgagtattttttaaaaggttttgcctgtaggtgttggacattttagctgcattct 700
|||||||||||| ||| | ||||||||| ||||||||||| |||| ||||||||||| ||
Sbjct: 1340 attactgagtatctttaagaaggttttggctgtaggtgtt-gacactttagctgcatcct 1282
Query: 701 ttacattttttttgtttgaagtaacagtaaccaaggccttgtcatt 746
| ||| | |||||| |||||||||||||||| || || ||||||||
Sbjct: 1281 taacactatttttg-ttgaagtaacagtaacaaatgcattgtcatt 1237
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,056
Number of Sequences: 1807
Number of extensions: 12056
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)