BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZG03FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig602 1120 0.0
>3x_Contig602
Length = 2648
Score = 1120 bits (565), Expect = 0.0
Identities = 749/788 (95%), Gaps = 17/788 (2%)
Strand = Plus / Plus
Query: 87 ccgaagagttgtcatttgagggaactctgaaaacaggtcaaacgtttatatgggaaccaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ccgaagagttgtcatttgagggaactctgaaaacaggtcaaacgtttatatgggaaccaa 756
Query: 147 taccagatttgtgtaacgttgagcacctcgaagggattaagaagttgctcaacggaccat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 taccagatttgtgtaacgttgagcacctcgaagggattaagaagttgctcaacggaccat 816
Query: 207 accatttcatcttttcgccaaatgcggaagaaggcgctaggatgctgggtgaaacagagc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 accatttcatcttttcgccaaatgcggaagaaggcgctaggatgctgggtgaaacagagc 876
Query: 267 caactgaactttcggattgcagcacaatattattgaaattagcagcattgattaaacctg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 caactgaactttcggattgcagcacaatattattgaaattagcagcattgattaaacctg 936
Query: 327 gtaacatttgtgtcctcagatgtggtaaaaaagggtcattggccttaatttgcaataaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 gtaacatttgtgtcctcagatgtggtaaaaaagggtcattggccttaatttgcaataaaa 996
Query: 387 atccatcaaacgatgacattatccatttcccagcataccattacaagactccagaatgtg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 atccatcaaacgatgacattatccatttcccagcataccattacaagactccagaatgtg 1056
Query: 447 tcattgatccaacaggaggcggaaatactttccttggagcatttgcattcgcatacgcca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tcattgatccaacaggaggcggaaatactttccttggagcatttgcattcgcatacgcca 1116
Query: 507 tgtgtaaagacattttaattgccagtatatgtggcaatattgctgcangttgtgccatcg 566
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1117 tgtgtaaagacatttcaattgccagtatatgtggcaatattgctgcaggttgtgccatcg 1176
Query: 567 aacagatcggtgtaccatctcacaatggaatgcactggaat-aaacgacttttgcagata 625
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1177 aacagatcggtgtaccatctcacaatggaatgcactggaataaaacgacttttgcagata 1236
Query: 626 gattattatatttatttatccactttatgaactgaagcagggccacnagtgaatatttga 685
|||||||||| |||||||||||| |||||||||||||||||||||| |||||| ||||
Sbjct: 1237 gattattata-ttatttatccac-ttatgaactgaagcagggccac-agtgaaatattga 1293
Query: 686 actttcttc-acccatgaaatttttaagtctgtatggtacctatttgggacagtttggat 744
||| ||||| ||| |||||| | ||||||||||| |||||||||| || |||| || |||
Sbjct: 1294 actctcttcaaccaatgaaa-tattaagtctgta-ggtacctattgggaacag-ttagat 1350
Query: 745 cagtttttttattttaaatttgaatttatcataccggatggggaagaaaattttcaattt 804
||| ||||||||||| |||||| | |||||||| || || |||||| |||| ||||||||
Sbjct: 1351 cag-ttttttatttt-aatttgta-ttatcata-cgtattgggaag-aaatattcaattt 1405
Query: 805 cagaccatttgttggtgtcgaccaagttccctttttactttttacgggaccttacagaac 864
|||| || ||| | ||||||||| ||||||||| | || |||||| ||||| |||||||
Sbjct: 1406 cagagca-ttgatagtgtcgacc-agttcccttctaac-ttttac-ggaccgtacagaaa 1461
Query: 865 caaatggt 872
||||||||
Sbjct: 1462 caaatggt 1469
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,338
Number of Sequences: 1807
Number of extensions: 12338
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)