BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZG03RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1737 1279 0.0
>3x_Contig1737
Length = 17214
Score = 1279 bits (645), Expect = 0.0
Identities = 718/737 (97%), Gaps = 4/737 (0%)
Strand = Plus / Minus
Query: 45 gcttcattggatctgtattagcgatactaggtatgccatctaagattattgagttgaatc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15169 gcttcattggatctgtattagcgatactaggtatgccatctaagattattgagttgaatc 15110
Query: 105 atcatagaatgtgaaagttgcattggagttacgtacttttaagataccatgttattttga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15109 atcatagaatgtgaaagttgcattggagttacgtacttttaagataccatgttattttga 15050
Query: 165 gaattgacacttgtactttaagttactctgtaacgctatttggaagctggatttttgaaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 15049 gaattgacacttgtactttaagttactctgtaacgctatttggaagctggattcctgaaa 14990
Query: 225 tggtgttgcctgaatatatgactctccagtatcagtgaacttaaggcagtattacacagg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14989 tggtgttgcctgaatatatgactctccagtatcagtgaacttaaggcagtattacacagg 14930
Query: 285 cattaattttaatcatattacaattttgtcactaagtggaaatagaacatgtcttcaaag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14929 cattaattttaatcatattacaattttgtcactaagtggaaatagaacatgtcttcaaag 14870
Query: 345 gtaacaaattcaggttctcccaactggacaacaggacaatctctgtccagaatgcaatgt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14869 gtaacaaattcaggttctcccaactggacaacaggacaatctctgtccagaatgcaatgt 14810
Query: 405 aaatttccaaggtgtgagttcaattcctccacttcagaatcttttagctcttcattgatg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14809 aaatttccaaggtgtgagttcaattcctccacttcagaatcttttagctcttcattgatg 14750
Query: 465 taggccaatgtgatatgaaactttatagaatcatgagatggatcttcaagaccagtcaat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14749 taggccaatgtgatatgaaactttatagaatcatgagatggatcttcaagaccagtcaat 14690
Query: 525 gcagagatggaatccctgagctgtttgatggctgtctcttgggaagtattcgatggtttt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14689 gcagagatggaatccctgagctgtttgatggctgtctcttgggaagtattcgatggtttt 14630
Query: 585 acaattacattaatggaccgaggcttactcgaaggcagttcgtctttcggtggtatatgg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14629 acaattacattaatggaccgaggcttactcgaaggcagttcgtctttcggtggtatatgg 14570
Query: 645 accttcagtttaacaccgtttggattagtt-cctggtctctaaaattgccattttttgac 703
|||||||||| ||||||| ||||||||||| ||||||||||||||||| ||| ||| ||
Sbjct: 14569 accttcagttcaacaccgcttggattagttccctggtctctaaaattggcatctttgaac 14510
Query: 704 aattgtgcaagatgggtattgacacttttgaaatgcttggattagcaacaagccccctta 763
||||||||||||||| || |||||| | ||||||||||| || |||| |||| |||| ||
Sbjct: 14509 aattgtgcaagatggtta-tgacac-tctgaaatgcttgcatcagcaccaag-ccccgta 14453
Query: 764 ggccaatgaacgactga 780
||||||||| |||||||
Sbjct: 14452 ggccaatgaccgactga 14436
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6711
Number of Sequences: 1807
Number of extensions: 6711
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)