BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZG05RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1665 1102 0.0
>3x_Contig1665
Length = 15710
Score = 1102 bits (556), Expect = 0.0
Identities = 664/696 (95%), Gaps = 3/696 (0%)
Strand = Plus / Minus
Query: 44 cttgcgtttctcccatattcctatataattccatatatatatatatgcatatacatacgc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6021 cttgcgtttctcccatattcctatataattccatatatatatatatgcatatacatacgc 5962
Query: 104 ttacagtcacgtgagtggtatttcttccattgaaaaatgttatacgcgtctttaaagacg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5961 ttacagtcacgtgagtggtatttcttccattgaaaaatgttatacgcgtctttaaagacg 5902
Query: 164 ttttatttatttgatgcaattttattagatcgacaactttgatgatgaagctgctcatgg 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 5901 ttttatttatttgatgcaattttattagatcgacaactttgatgatgaagctgcacaagg 5842
Query: 224 aactaaggtacacagagacggctgaacttatcaatggattcattgttgaaatcattctcg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5841 aactaaggtacacagagacggctgaacttatcaatggattcattgttgaaatcattctcg 5782
Query: 284 tatgttttttgagtttactttagtaaatcacttttttggcttaaggtaaagtactaacga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5781 tatgttttttgagtttactttagtaaatcacttttttggcttaaggtaaagtactaacga 5722
Query: 344 ataagtcacaattcagtcagcaaagaagcgaagatgacattcaaaccgtacgaagttctg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5721 ataagtcacaattcagtcagcaaagaagcgaagatgacattcaaaccgtacgaagttctg 5662
Query: 404 tgaatgtcaaccatgacagacctaatgaatacgctcttgatatgaaaaataggaactatg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5661 tgaatgtcaaccatgacagacctaatgaatacgctcttgatatgaaaaataggaactatg 5602
Query: 464 atatgcaattctacaagatgtatcaatatcgacttaacgttttaagaaaccgtgtggaga 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5601 atatgcaattctacaagatgtatcaatatcgacttaacgttttaagaaaccgtgtggaga 5542
Query: 524 gctgttgccagtcgaagtggaacagcgaagttcgactttcaagtagaaaagtcgtc-aaa 582
|||||||||||||||||||||||||||| | |||||| | |||||||||||||| |||
Sbjct: 5541 gctgttgccagtcgaagtggaacagcgagttccgacttcaaggtagaaaagtcgtcaaaa 5482
Query: 583 aaagcagggttttagatatacaagctggggaaccatgctggtgttttggccactgggtat 642
|||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct: 5481 aaagcaaggtattagatatacaagctggggaaccatgctggtgtattgg-cactgtgtat 5423
Query: 643 tgggaaaggc-attcaaggcgaacattttgcaggaaaatgtcgatgaaccatatgggccc 701
|| |||| || || |||| |||||||| ||||||||| |||||||| ||||||| |
Sbjct: 5422 tgtgaaatgcaatacaagccgaacattctgcaggaaatcgtcgatgacacatatggcgca 5363
Query: 702 ccatacttaattaagagctttccaaatcctgagggt 737
||| ||||||| ||||||| | || |||||||||||
Sbjct: 5362 ccagacttaatcaagagctatacagatcctgagggt 5327
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,993
Number of Sequences: 1807
Number of extensions: 10993
Number of successful extensions: 319
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)