BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZG06RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1680 1144 0.0
>3x_Contig1680
Length = 12597
Score = 1144 bits (577), Expect = 0.0
Identities = 677/701 (96%), Gaps = 7/701 (0%)
Strand = Plus / Minus
Query: 47 ttaagttgcttgaagacttgacgcctgaataatattccaatgcgtctgatcatttctgca 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6802 ttaagttgcttgaagacttgacgcctgaataatattccaatgcgtctgatcatttctgca 6743
Query: 107 tttttgcctcagttatgaacaatgtcagagattctataattatcgtatttgcatctatat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6742 tttttgcctcagttatgaacaatgtcagagattctataattatcgtatttgcatctatat 6683
Query: 167 cattattaactcaattagcagccctcaattttaatgtttcgatcagtttcctttcactgt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6682 cattattaactcaattagcagccctcaattttaatgtttcgatcagtttcctttcactgt 6623
Query: 227 tttgtatcaattggtctatatatacgccattatacatgtaaatgtagaattctctttaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6622 tttgtatcaattggtctatatatacgccattatacatgtaaatgtagaattctctttaaa 6563
Query: 287 gttagatccacatgtctctaatacttgtaaattagaaagatagaacagttagaagagaag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6562 gttagatccacatgtctctaatacttgtaaattagaaagatagaacagttagaagagaag 6503
Query: 347 tgtgcggatgacggctggaactgatgcacatgctcgaataattttaaaaatggtgcgagg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6502 tgtgcggatgacggctggaactgatgcacatgctcgaataattttaaaaatggtgcgagg 6443
Query: 407 acagaataaagataatgaagaagaataaggaggggaagaagggaaagaagtagaaggaga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6442 acagaataaagataatgaagaagaataaggaggggaagaagggaaagaagtagaaggaga 6383
Query: 467 aagaacggaaatctaacagtacgttatgttttgttttttgttcaatatagcttcaaactt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6382 aagaacggaaatctaacagtacgttatgttttgttttttgttcaatatagcttcaaactt 6323
Query: 527 acaacttcaaagccttttggctttttccatgggtatttcttggttagtgaagtgaccgta 586
|||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 6322 acaacttcaaagcc-tttggcttttcccatgggta-ttcttggttagtgaagtgaccgta 6265
Query: 587 ggaagccgttggcaagtagaatgggtctagccaaatctaattcctt-acaaggacacca- 644
||||| |||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 6264 -gaagcggttggcaagtag-attggtctagccaaatctaattccttcacaaggacaccag 6207
Query: 645 gtctcaagtcgaaagtctttttggagatttcaataacttcttattctgggatggtagccg 704
||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||| ||
Sbjct: 6206 gtctcaagtcgaagttcttcttgatgatttcaataacttcttcatctgggatggtag-cg 6148
Query: 705 gtacaataggggtccacattcagggttaaaggttaagcgat 745
|||| ||||| ||| |||| || || |||||||| ||||||
Sbjct: 6147 gtaccataggtgtcgacatgcaaggataaaggttcagcgat 6107
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7400
Number of Sequences: 1807
Number of extensions: 7400
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)