BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZG07RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1207 0.0
>3x_Contig1761
Length = 23186
Score = 1207 bits (609), Expect = 0.0
Identities = 707/732 (96%), Gaps = 7/732 (0%)
Strand = Plus / Plus
Query: 44 gcttgctttagaggaagctagagctaagagaactcaccgtgttattaaccatccatacta 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14598 gcttgctttagaggaagctagagctaagagaactcaccgtgttattaaccatccatacta 14657
Query: 104 tggtaatttcaccggtcctcaagcagaagattatctcagaagtagagaacgtggtgattt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14658 tggtaatttcaccggtcctcaagcagaagattatctcagaagtagagaacgtggtgattt 14717
Query: 164 cgttatcagacaatcttctcgtggtgatgatcaccttgccattacatggaagttggacaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14718 cgttatcagacaatcttctcgtggtgatgatcaccttgccattacatggaagttggacaa 14777
Query: 224 agatttgttccaacacgttgatatcctggaaaaggacaaggaaaatccattggcgttagg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14778 agatttgttccaacacgttgatatcctggaaaaggacaaggaaaatccattggcgttagg 14837
Query: 284 taagactctaatagtggaggatcaaaaatatcatgatctagatcaaatcatcgttgaata 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14838 taagactctaatagtggaggatcaaaaatatcatgatctagatcaaatcatcgttgaata 14897
Query: 344 tttgcagaataaagtgaggttgctaaacgaaattacttctaacgaaaagttcaaaaaggg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14898 tttgcagaataaagtgaggttgctaaacgaaattacttctaacgaaaagttcaaaaaggg 14957
Query: 404 aaccaagaaagaagtcatcaagttcatcgaagactattcgaaggtgaaccccaacagatc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14958 aaccaagaaagaagtcatcaagttcatcgaagactattcgaaggtgaaccccaacagatc 15017
Query: 464 cgtttattatttcagtttcaattacgaacaccctggatggttctacctaatgtttaaaat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15018 cgtttattatttcagtttcaattacgaacaccctggatggttctacctaatgtttaaaat 15077
Query: 524 caatgcccagtcccaactatacgtatggaatgtttaacttacacatactggggttttctt 583
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 15078 caatgcccagtcccaactatacgtatggaatgttaaacttacacatactgggtttttctt 15137
Query: 584 gg-taattacaactattccactgtgattcaactctgcaatggtttcaaaactcttcttca 642
|| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 15138 ggttaattacaactatccaactgtgattcaactctgcaatggtttcaaaactcttc-tca 15196
Query: 643 aattcagtagcagaaacaagacccaggacaacatccacaacatcttgggaaggcacttat 702
||| ||||||||||||||||||||| ||||||| | |||||| || ||| |||| |||
Sbjct: 15197 aatccagtagcagaaacaagacccaagacaacaacaacaacaactcggg-aggctactat 15255
Query: 703 gggtattgagcagcggtaaacaccagttgccattttttttttggttctccctccttcgaa 762
|| |||||||||||||| |||| |||||| ||||||||| | ||||||||||| |||||
Sbjct: 15256 ggatattgagcagcggt-aacaacagttg-catttttttct--gttctccctccatcgaa 15311
Query: 763 ggtgttaataag 774
|||||||||||
Sbjct: 15312 tgtgttaataag 15323
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9139
Number of Sequences: 1807
Number of extensions: 9139
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)