BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZG09FM1.SCF screened BAC_end
         (896 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1265                                                        1106   0.0  

>3x_Contig1265 
          Length = 8324

 Score = 1106 bits (558), Expect = 0.0
 Identities = 633/653 (96%), Gaps = 4/653 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   tcaatggacgtattgcaaaattatctgatccggagtttgtagctagcttaggtccccagg 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4862 tcaatggacgtattgcaaaattatctgatccggagtttgtagctagcttaggtccccagg 4803

                                                                        
Query: 146  atttggtcaccattgcgaagcacgactctcaaaagaaaaccgtcggctcctttttttatg 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4802 atttggtcaccattgcgaagcacgactctcaaaagaaaaccgtcggctcctttttttatg 4743

                                                                        
Query: 206  tggctggactggacacttcagatccagctagtattgcagtgtggttgaaacaattgatgg 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4742 tggctggactggacacttcagatccagctagtattgcagtgtggttgaaacaattgatgg 4683

                                                                        
Query: 266  aatgcattcaggaaaaaccacagttatggtttggcaagaatgttaaattcactctcgaat 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4682 aatgcattcaggaaaaaccacagttatggtttggcaagaatgttaaattcactctcgaat 4623

                                                                        
Query: 326  ggatctcgttcactacttggaatatcttcaaacaatgtgatatgactattaagatgtatc 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4622 ggatctcgttcactacttggaatatcttcaaacaatgtgatatgactattaagatgtatc 4563

                                                                        
Query: 386  tgccaggtacctttgaaatagattttgttgacaaaaatcgtaataagctacaattcgact 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4562 tgccaggtacctttgaaatagattttgttgacaaaaatcgtaataagctacaattcgact 4503

                                                                        
Query: 446  cagatgaagatactgatatggcgtgggctgaagccttcatcagtgggaaaatgagagaca 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4502 cagatgaagatactgatatggcgtgggctgaagccttcatcagtgggaaaatgagagaca 4443

                                                                        
Query: 506  taatgtgtatggtagagaatagagatgatggagaagttatcaatgtttgtggagactaga 565
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4442 taatgtgtatggtagagaatagagatgatggagaagttatcaatg-ttgtggagactaga 4384

                                                                        
Query: 566  atttancaccccttgatgactggtcaattggattctgtagatgaaatgttctttaaataa 625
            |||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 4383 atttacaaccccttgatgactggtcaattggattctgtagatgaaatgttcttcaaatta 4324

                                                                        
Query: 626  tt-ccgcttttctttcctcgtggcatttgagtttgtttgcccgtgtatataccgtaatat 684
            || ||||| ||||| |||||||||| ||||| ||| |||||||||||||||| |||||||
Sbjct: 4323 ttcccgctattcttccctcgtggca-ttgaggttggttgcccgtgtatatacggtaatat 4265

                                                                 
Query: 685  gccttccacttttaacaat-actttttgggggaaactttttgttaaattgttc 736
            |||||||||||| | |||| ||| | ||| ||||||||| ||| |||||||||
Sbjct: 4264 gccttccactttaaccaataactatctggtggaaactttatgtgaaattgttc 4212


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6205
Number of Sequences: 1807
Number of extensions: 6205
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)