BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZG09RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig824 967 0.0
>3x_Contig824
Length = 4266
Score = 967 bits (488), Expect = 0.0
Identities = 554/566 (97%), Gaps = 8/566 (1%)
Strand = Plus / Plus
Query: 43 gctttcgaagctaaaggagtacaggtatgttactcgatcatagagatgaactacattctg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3473 gctttcgaagctaaaggagtacaggtatgttactcgatcatagagatgaactacattctg 3532
Query: 103 tttcctttcttgcaaggaaatgatgaaaaggtgatcatgagttactaaccacatcgatta 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3533 tttcctttcttgcaaggaaatgatgaaaaggtgatcatgagttactaaccacatcgatta 3592
Query: 163 aaattgaatgaagttaccaaggtgaggacaggtcgattatctctaagtatactttgtagc 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3593 aaattgaatgaagttaccaaggtgaggacaggtcgattatctctaagtatactttgaagc 3652
Query: 223 cattctggtctcaatttgtgaaaatttttccattatggatggcacctaatgttgttacgc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3653 cattctggtctcaatttgtgaaaatttttccattatggatggcacctaatgttgttacgc 3712
Query: 283 tttcagggtttggattcatcattgttaatgttttgacagtcttgtacttaaatccaacct 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3713 tttcagggtttggattcatcattgttaatgttttgacagtcttgtacttaaatccaacct 3772
Query: 343 tagatcaagaacagccacgttgggcatacttttcgtatgcgttaggtctcttcttgtatc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3773 tagatcaagaacagccacgttgggcatacttttcgtatgcgttaggtctcttcttgtatc 3832
Query: 403 aaacgtttgatgcatgtgatggagcacatgcacgtcggacaggccaatcggggccgttgg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3833 aaacgtttgatgcatgtgatggagcacatgcacgtcggacaggccaatcggggccgttgg 3892
Query: 463 gtgaattgtttgatcattgtattgatgcattgaacactactctgtncaatg-ttatattt 521
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 3893 gtgaattgtttgatcattgtattgatgcattgaacactactctgt-caatgtttata-tt 3950
Query: 522 ttgntctgnngtgtggcgtttggatataaaccgatgattacttttcatccagttcgcttt 581
||| |||| |||||||| |||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 3951 ttgttctg-tgtgtggcg-ttggatataaaccgatga-tacttttcatccagttcgc-tt 4006
Query: 582 tggtgtggcaacttctatttgagtac 607
|| ||| |||||||||||||||||||
Sbjct: 4007 tgttgt-gcaacttctatttgagtac 4031
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,813
Number of Sequences: 1807
Number of extensions: 15813
Number of successful extensions: 167
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)