BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZG11FM1.SCF screened BAC_end
         (958 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1108                                                        1114   0.0  

>3x_Contig1108 
          Length = 6240

 Score = 1114 bits (562), Expect = 0.0
 Identities = 660/690 (95%), Gaps = 2/690 (0%)
 Strand = Plus / Plus

                                                                        
Query: 89   cccatcaacttcgaaacagaaacaatgagggaaaactaatctgtgtcgtatgtattctcc 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3203 cccatcaacttcgaaacagaaacaatgagggaaaactaatctgtgtcgtatgtattctcc 3262

                                                                        
Query: 149  ctgatcaacccttttcaaattattaattctcttgtgtgtcttgttaccggcttctttcat 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3263 ctgatcaacccttttcaaattattaattctcttgtgtgtcttgttaccggcttctttcat 3322

                                                                        
Query: 209  gaattcgcatgtgtttttcatttccatatatcgtttgattttaacttagtattcaatttt 268
            ||||||||| |      |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3323 gaattcgcagggtcagctcatttccatatatcgtttgattttaacttagtattcaatttt 3382

                                                                        
Query: 269  taatttcgctgaaattctttctccttggtggtaaatagtatggagatatatggatggaat 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3383 taatttcgctgaaattctttctccttggtggtaaatagtatggagatatatggatggaat 3442

                                                                        
Query: 329  ctgcgatgcgctacaaatttgacacatgatttgacgaaatgaaaagattgttgggttgaa 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3443 ctgcgatgcgctacaaatttgacacatgatttgacgaaatgaaaagattgttgggttgaa 3502

                                                                        
Query: 389  tggctgcacccgtgaataaaacgtaatctaataatctcatcttattgtagtaggtgcttc 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3503 tggctgcacccgtgaataaaacgtaatctaataatctcatcttattgtagtaggtgcttc 3562

                                                                        
Query: 449  accgggagtcacatcgatatgaatatgctacagtagttcggatctctataacttatttaa 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3563 accgggagtcacatcgatatgaatatgctacagtagttcggatctctataacttatttaa 3622

                                                                        
Query: 509  aaacgagagagtatcacgtgatgtatatcatttcctcacatcatatctacattttgaaac 568
            ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 3623 aaacgagagagtatcacgtgatgtatatcattt-ctcacatcatatctacatcttgaaac 3681

                                                                        
Query: 569  tacagcaagactggcaggcgtgctaatgcttacaataggaaacagtgtggttcgcagata 628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3682 tacagcaagactggcaggcgtgctaatgcttacaataggaaacagtgtggttcgcagata 3741

                                                                        
Query: 629  ggggcgaatgaatgttgtgtgtttgcaaccttaaggaggaagaactcctttttttttaac 688
            |||||||| ||||||   |||| |||||||||||||||||||||||||||||| |  |||
Sbjct: 3742 ggggcgaaggaatgtgtggtgtatgcaaccttaaggaggaagaactcctttttctcgaac 3801

                                                                        
Query: 689  ggtcaaccctcgatgcttgacattcaggtatttttaacttccattttcccaaaaaaaaaa 748
            ||||||||  |||||||  |||| ||||||| | |||| |||| | ||||||||||||||
Sbjct: 3802 ggtcaacctccgatgctgtacatccaggtatatataac-tccaatatcccaaaaaaaaaa 3860

                                          
Query: 749  agaatggttgcaacacttcattaaaagggc 778
            ||||||| |||||||| ||| |||||||||
Sbjct: 3861 agaatggctgcaacacgtcagtaaaagggc 3890


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,082
Number of Sequences: 1807
Number of extensions: 13082
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)