BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZG11RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1507 1128 0.0
>3x_Contig1507
Length = 11359
Score = 1128 bits (569), Expect = 0.0
Identities = 663/689 (96%), Gaps = 4/689 (0%)
Strand = Plus / Minus
Query: 47 cattcgatgatgcaagaatgatagccaaatcatcgatcttcttaccgcaatttttgcatg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7554 cattcgatgatgcaagaatgatagccaaatcatcgatcttcttaccgcaatttttgcatg 7495
Query: 107 agtccgagcactcgaaacatatgagatcacttgtacccagaactaagaaatccgagtcac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7494 agtccgagcactcgaaacatatgagatcacttgtacccagaactaagaaatccgagtcac 7435
Query: 167 aacttagaggcttatcacatttgtagcaggagaaacagtgggtgtgccatctatttccgc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7434 aacttagaggcttatcacatttgtagcaggagaaacagtgggtgtgccatctatttccgc 7375
Query: 227 ctaattcgtacgcatgacccatagtaatatggttcgtacaacgaacacatactgacgtct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7374 ctaattcgtacgcatgacccatagtaatatggttcgtacaacgaacacatactgacgtct 7315
Query: 287 cagcagcccccttcggagaggcagacatacggtaattagttttgcagatgtagcacgctg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7314 cagcagcccccttcggagaggcagacatacggtaattagttttgcagatgtagcacgctg 7255
Query: 347 tggaggtgatggtcttgtagtgtgttcgtttgtccctggatcaataactttttgatctaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7254 tggaggtgatggtcttgtagtgtgttcgtttgtccctggatcaataactttttgatctaa 7195
Query: 407 tggatcaaaagctgaaaagaaatctaagattaatcttcgaatcgaaagtataataataac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7194 tggatcaaaagctgaaaagaaatctaagattaatcttcgaatcgaaagtataataataac 7135
Query: 467 agaacacgcacaaagagcacgacacaccaaaaaaaaaaaaaagttaatagagagatgtat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7134 agaacacgcacaaagagcacgacacaccaaaaaaaaaaaaaagttaatagagagatgtat 7075
Query: 527 tagcagcggctttatactatgatattttcttgccacgcacccgttgagagtactatttta 586
||||||||||||||||||||||||||||||||||||||||| | |||||||||| | ||
Sbjct: 7074 tagcagcggctttatactatgatattttcttgccacgcaccgttagagagtacta-tata 7016
Query: 587 ggggaaaagaatttcaagctgtttctcgtggacggagttaattcccctcattttgaatgg 646
|||||||||||| ||||||||| |||||||||||||| |||| |||||| | ||||| |
Sbjct: 7015 agggaaaagaattccaagctgttcctcgtggacggagtaaatt-ccctcaatatgaat-g 6958
Query: 647 ttgagatcgaaattttgatacgagggttaatttaacttaaggaatgtttttgtccagaat 706
||||||||||||| | |||||||||||| | |||||| |||||||||||| || ||| |
Sbjct: 6957 ttgagatcgaaatatagatacgagggttcaattaactcaaggaatgttttgatcgagagt 6898
Query: 707 gaatgcgacccttattttgttaaaatccg 735
|||||| | || ||| |||||||||||||
Sbjct: 6897 gaatgc-agccctatcttgttaaaatccg 6870
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,520
Number of Sequences: 1807
Number of extensions: 14520
Number of successful extensions: 367
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)