BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC28ZG12FM1.SCF screened BAC_end (1128 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1690 202 1e-51 >3x_Contig1690 Length = 13018 Score = 202 bits (102), Expect = 1e-51 Identities = 120/126 (95%) Strand = Plus / Plus Query: 91 caagctatcagcctacgttctgacggaatgtacccttttttttgctctgaaaacgttttt 150 |||||| || |||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 11852 caagctttctgcctacgttctgtcgtaatgtacccttttttttgctctgaaaacgttttt 11911 Query: 151 gctcttagctattgaaagggacatacaggctttttttaagacaaagaccaacctcatttt 210 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 11912 gctcttagctatttaaagggacatacaggcttttcttaagacaaagaccaacctcatttt 11971 Query: 211 gcgtaa 216 |||||| Sbjct: 11972 gcgtaa 11977 Score = 117 bits (59), Expect = 5e-26 Identities = 73/78 (93%) Strand = Plus / Plus Query: 253 gacagngcaaaacagcggaaatcaatgaggaaggggttcttagctgggagggtgtgagtt 312 ||||| ||||||||| ||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 12015 gacagtgcaaaacagtggaaatcaatgaggaaggggttcttagtttggagggtgtgagtc 12074 Query: 313 ttccacaatgatctaaga 330 |||||||||||||||||| Sbjct: 12075 ttccacaatgatctaaga 12092 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7264 Number of Sequences: 1807 Number of extensions: 7264 Number of successful extensions: 117 Number of sequences better than 1.0e-20: 1 length of query: 1128 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1112 effective length of database: 10,329,639 effective search space: 11486558568 effective search space used: 11486558568 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)