BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC28ZH01FM1.SCF screened BAC_end (930 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig343 1243 0.0 >3x_Contig343 Length = 1398 Score = 1243 bits (627), Expect = 0.0 Identities = 657/667 (98%) Strand = Plus / Plus Query: 88 tatcttcacgaaggggatgactttacgattcaaatctccagatgcagatgtaatccgtag 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 732 tatcttcacgaaggggatgactttacgattcaaatctccagatgcagatgtaatccgtag 791 Query: 148 ttgggtacagtccatcaacgagttattaccacacttgaacaattatggctctgaatctga 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 792 ttgggtacagtccatcaacgagttattaccacacttgaacaattatggctctgaatctga 851 Query: 208 ccttgagattgcagaatccgatgacgaacaaattgaaggggaacaagctgatgaacatgg 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 852 ccttgagattgcagaatccgatgacgaacaaattgaaggggaacaagctgatgaacatgg 911 Query: 268 gatacagaaaacaactcaagtcgttaaagaaaataaagataccaattccacttctgatat 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 912 gatacagaaaacaactcaagtcgttaaagaaaataaagataccaattccacttctgatat 971 Query: 328 aaaatctattaataacggagttgtcgaagaagacaagaagtttttcgagttttatgacgc 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 972 aaaatctattaataacggagttgtcgaagaagacaagaagtttttcgagttttatgacgc 1031 Query: 388 cttaaaaccttcgcatctaattcaatccggtgtaatacatgccaagaataaaagatctct 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1032 cttaaaaccttcgcatctaattcaatccggtgtaatacatgccaagaataaaagatctct 1091 Query: 448 aactggaaggaaatggaaatcctataaatgtgaacttacaaataggtctttaaaacttta 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1092 aactggaaggaaatggaaatcctataaatgtgaacttacaaataggtctttaaaacttta 1151 Query: 508 ttcgatcaagactggtgactgtaggtattctgttccaatggagaatgtagttgactgtat 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1152 ttcgatcaagactggtgactgtaggtattctgttccaatggagaatgtagttgactgtat 1211 Query: 568 tgaagtggacagttaagatcctttattcgcagtaattacttttcaccaaaggctaaaact 627 ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 1212 tgaagtggacagtaaagatcctttattcgcagtaatcactttcaaccaaaggctaaaact 1271 Query: 628 aaaagctaatgatgaagatgaattagtagattggatcataaataccaagagttgcgtaat 687 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1272 aaaagctaatgatgaagatgaattagtagattggatcataaatacaaagagttgcgtaat 1331 Query: 688 gggtagaaactcattagcagcacacacaaaaggaagttgagattgattagcgatggtcct 747 || |||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| Sbjct: 1332 ggttagaaactcattagcagcacacacaaaaagaagttgagatagataggcgatggtcct 1391 Query: 748 cacattt 754 ||||||| Sbjct: 1392 cacattt 1398 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7068 Number of Sequences: 1807 Number of extensions: 7068 Number of successful extensions: 57 Number of sequences better than 1.0e-20: 1 length of query: 930 length of database: 10,358,551 effective HSP length: 16 effective length of query: 914 effective length of database: 10,329,639 effective search space: 9441290046 effective search space used: 9441290046 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)