BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZH01RM1.SCF screened BAC_end
(987 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig945 761 0.0
>3x_Contig945
Length = 3379
Score = 761 bits (384), Expect = 0.0
Identities = 413/420 (98%), Gaps = 2/420 (0%)
Strand = Plus / Minus
Query: 48 cttaatcttgccacttctttggttaccttttctttctttt-aagttctgttagtggtcta 106
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2355 cttaatcttgccacttctttggttaccttttctttcttttcaagttctgttagtggtcta 2296
Query: 107 attctatagcccggaattatgcttttaaaaacggtgaccaatgctaatatcgagaacttg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2295 attctatagcccggaattatgcttttaaaaacggtgaccaatgctaatatcgagaacttg 2236
Query: 167 gcagtattcggatttttagagcctgccattttacgtagacgtgtcaatgctgttttattt 226
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2235 gcagtattcggatttttagagcctgccattttacgtagacgtgtcaatgctgccgtattt 2176
Query: 227 tcttcggcttcttccataattctttcaactaattctgcaattgtctcttttaattctata 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2175 tcttcggcttcttccataattctttcaactaattctgcaattgtctcttttaattctata 2116
Query: 287 attgtttcttcagtgtctggtacctcgttatcatcttcttcctctcctgacgacgcagct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2115 attgtttcttcagtgtctggtacctcgttatcatcttcttcctctcctgacgacgcagct 2056
Query: 347 ccatccttcgaattttcctcctcgtcatttgattcattgtctgcttcatcttccttagat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2055 ccatccttcgaattttcctcctcgtcatttgattcattgtctgcttcatcttccttagat 1996
Query: 407 ttcccgacgtcattcctnttgagatttgatgatattcctttccactttaccatttttctt 466
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1995 ttccggacgtcattcct-ttgagatttgatgatattcctttccactttaccatttctctt 1937
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,228
Number of Sequences: 1807
Number of extensions: 21228
Number of successful extensions: 399
Number of sequences better than 1.0e-20: 1
length of query: 987
length of database: 10,358,551
effective HSP length: 16
effective length of query: 971
effective length of database: 10,329,639
effective search space: 10030079469
effective search space used: 10030079469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)