BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZH04FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1613 1158 0.0
>3x_Contig1613
Length = 13977
Score = 1158 bits (584), Expect = 0.0
Identities = 630/643 (97%), Gaps = 2/643 (0%)
Strand = Plus / Plus
Query: 88 taagaaacaggtgatagcagagatagcacaagtgatgaaaataacctttttacgaccaaa 147
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8288 taagacacaggtgatagcagagatagcacaagtgatgaaaataacctttttacgaccaaa 8347
Query: 148 catattgttcaaccaatcggtagcccaacacgagacaccagcacaacatagataaggtgc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8348 catattgttcaaccaatcggtagcccaacacgagacaccagcacaacatagataaggtgc 8407
Query: 208 accgttaacaagaccttccaaccaatcgtccctcttggatcctgaccctaaacccaattc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8408 accgttaacaagaccttccaaccaatcgtccctcttggatcctgaccctaaacccaattc 8467
Query: 268 tttagggtagaacaagttagcaccattgataacagtttcatccataccttgcacggcagc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8468 tttagggtagaacaagttagcaccattgataacagtttcatccataccttgcacggcagc 8527
Query: 328 acccattgcactggcagcgataatagcaatcaactttggagggactctccaaggatgatg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8528 acccattgcactggcagcgataatagcaatcaactttggagggactctccaaggatgatg 8587
Query: 388 aatttcatcgtaacaagcaatacgttcatcttcctttagaacatttaacctgtcgtattc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8588 aatttcatcgtaacaagcaatacgttcatcttcctttagaacatttaacctgtcgtattc 8647
Query: 448 gtttggttttctggccaaagcagcaccacgagcgaaaatatcatcatcatttggcaactc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8648 gtttggttttctggccaaagcagcaccacgagcgaaaatatcatcatcatttggcaactc 8707
Query: 508 gtacttcttagcanaagcacgtcccatgttcataacctgctcttctgaatattcagccaa 567
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8708 gtacttcttagcaaaagcacgtcccatgttcataacctgctcttctgaatattcagccaa 8767
Query: 568 tatattttcttcttgcacactatttcgatccctttcttttggatcttcaccaatactaga 627
|||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct: 8768 tatattttcttcttgcacactattcggatcccttccttctggatcttcaccaatactaga 8827
Query: 628 aatggaactgtcattgttcatcgcaacgaaaacacc-ccaccggcagatttcctttttgc 686
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 8828 aatggaactgtcatcgttcatcgcaacgaaaacaccaccaccggcagatttcctctttgc 8887
Query: 687 ctcatgaaagctggtcaacttttgctttcgacagataagcact 729
|||||||||||||||| |||| ||| |||||||||| ||||||
Sbjct: 8888 ctcatgaaagctggtc-acttctgcattcgacagatcagcact 8929
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7520
Number of Sequences: 1807
Number of extensions: 7520
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)