BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZH05FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1668 1281 0.0
>3x_Contig1668
Length = 13429
Score = 1281 bits (646), Expect = 0.0
Identities = 682/689 (98%), Gaps = 4/689 (0%)
Strand = Plus / Plus
Query: 87 tgctagcgagatttcgagctcttccaaatcgtaaacaacgtaagcactggttaggaaggc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8012 tgctagcgagatttcgagctcttccaaatcgtaaacaacgtaagcactggttaggaaggc 8071
Query: 147 atcacctaaagtaatttcgttatcagattgagggagtattcccaagacacattgggaaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8072 atcacctaaagtaatttcgttatcagattgagggagtattcccaagacacattgggaaga 8131
Query: 207 actgctcgttgtaacaatgtaatcacttaagggggatatgatatggaagccaccaaagtc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8132 actgctcgttgtaacaatgtaatcacttaagggggatatgatatggaagccaccaaagtc 8191
Query: 267 gaagacaagatcataatcactgccagaatcacaatccacaaaatagtatcctgaactgga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8192 gaagacaagatcataatcactgccagaatcacaatccacaaaatagtatcctgaactgga 8251
Query: 327 agagtacgtagcactaacagaacttgcaatggcagcagctaaactacttgggaagtaaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8252 agagtacgtagcactaacagaacttgcaatggcagcagctaaactacttgggaagtaaca 8311
Query: 387 gaatgtggcaccagtgtctagcaatgcagggtacttagtctgtgtcacagtctcgttacc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8312 gaatgtggcaccagtgtctagcaatgcagggtacttagtctgtgtcacagtctcgttacc 8371
Query: 447 ataactgctcgtcacaccgataccttgtagagtgatcgataatctaatctgttcagtgta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8372 ataactgctcgtcacaccgataccttgtagagtgatcgataatctaatctgttcagtgta 8431
Query: 507 gcctatgcttctgagagcgttgaccattggaacggtgtacaacgtacctgtatatttgct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8432 gcctatgcttctgagagcgttgaccattggaacggtgtacaacgtacctgtatatttgct 8491
Query: 567 gtgatcgacggcaccgaataagatagaaccagaatccgcatctaagtcattcaagaaaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8492 gtgatcgacggcaccgaataagatagaaccagaatccgcatctaagtcattcaagaaaac 8551
Query: 627 agaatatgcattcttttcgatgacgccgtttctttgcaacacgatagggaagttatcgta 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8552 agaatatgcattcttttcgatgacgccgtttctttgcaacacgatagggaagttatcgta 8611
Query: 687 ttgatagcggntgtaggtgcttaacttgacc-gaataaatgggattcagaacctgtcaat 745
|||||||||| |||||||||||||| ||||| |||||| | |||||||||||||||||||
Sbjct: 8612 ttgatagcggttgtaggtgcttaac-tgaccggaataagt-ggattcagaacctgtcaat 8669
Query: 746 ccaataccctaagaaaccgaattgggaat 774
|||||| ||||||| ||||||||||||||
Sbjct: 8670 ccaata-cctaagacaccgaattgggaat 8697
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5790
Number of Sequences: 1807
Number of extensions: 5790
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)