BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZH05RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig478 1132 0.0
>3x_Contig478
Length = 3300
Score = 1132 bits (571), Expect = 0.0
Identities = 654/678 (96%), Gaps = 3/678 (0%)
Strand = Plus / Plus
Query: 74 tcaatgaatacttctcagttttctgtatcaaaacaaccccaacaccagagtggtagcaac 133
||||||||||| | |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcaatgaatacatatcagttatatgtatcaaaacaaccccaacaccagagtggtagcaac 374
Query: 134 tctggtttgcattctctattgacccatgattctagaaattgactttcatggcagttgtct 193
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 375 tctggtttgcattctctattgacccatgattctagaaattgaatatcatggcagttgtct 434
Query: 194 tcaaagctacctaactctgaagtgtgtggttattcaaaaatataagactataaacatatt 253
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcaaagctacataactctgaagtgtgtggttattcaaaaatataagactataaacagtgg 494
Query: 254 attatcttcatatataatgcacttctaaattttaatgatcgaaatactcgaaaatacatt 313
|||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgtatcatcttttataatgcacttctaaattttaatgatcgaaatactcgaaaatacatt 554
Query: 314 tgtactgaagaattctattacctaacatgttccagtcctgctttgtaatattgagttctt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgtactgaagaattctattacctaacatgttccagtcctgctttgtaatattgagttctt 614
Query: 374 caagtaattttatcttgctgaaaactgaacctcccttccaggtcaacattgagggatcca 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 caagtaattttatcttgctgaaaactgaacctcccttccaggtcaacattgagggatcca 674
Query: 434 tatcatgtggaggaggtaagatattaattggtaaaagatcatcatcactatgaagagttt 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tatcatgtggaggaggtaagatattaattggtaaaagatcatcatcactatgaagagttt 734
Query: 494 gtaaagaatcccagtatgcttctatttctgcctttatcaattttgataactttttcttat 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gtaaagaatcccagtatgcttctatttctgcctttatcaattttgataactttttcttat 794
Query: 554 atgcaatcgccgcttgaggatcagtaggttctagatctaatttgttatcgg-ttcataag 612
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 795 atgcaatcgccgcttgaggatcagtaggttctagatctaatttgttatcggtttcataag 854
Query: 613 acttgattacttcaccgatcttttccattaaggtgcttaatgccgatatactcanaagct 672
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 855 acttgattacttcaccgatcttttccattaaggtgcttaatgcggatatactcaaaagct 914
Query: 673 ttggcctccaaatattgattctatccgttagaatgaagtctaatggctggaattttcgaa 732
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct: 915 ttggcctccaaatattgattctatccgttagaatgaagtctagt-gctggaattttcg-a 972
Query: 733 aaatcctccaaccatgag 750
| |||||||||| |||||
Sbjct: 973 agatcctccaacaatgag 990
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7948
Number of Sequences: 1807
Number of extensions: 7948
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)