BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZH06FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1211 0.0
>3x_Contig1720
Length = 19870
Score = 1211 bits (611), Expect = 0.0
Identities = 676/691 (97%), Gaps = 5/691 (0%)
Strand = Plus / Plus
Query: 86 tacaaccaggaatacgtcgatctgctggaaacgaggaactcgcttttgactaaagcatta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9493 tacaaccaggaatacgtcgatctgctggaaacgaggaactcgcttttgactaaagcatta 9552
Query: 146 agttatttattcagacagttcgatagatgtgttgatagcggcttagtgcagatccatcct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9553 agttatttattcagacagttcgatagatgtgttgatagcggcttagtgcagatccatcct 9612
Query: 206 gagagattttcggagttcaggcagttacaaatgcaatccatgattctcaatcaaagatct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9613 gagagattttcggagttcaggcagttacaaatgcaatccatgattctcaatcaaagatct 9672
Query: 266 gatatggatgatctagattcggacgaatatgatgaatgggaacaagtgggttcgagtcaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9673 gatatggatgatctagattcggacgaatatgatgaatgggaacaagtgggttcgagtcaa 9732
Query: 326 aaccctgagctttctgttcgcgacggaccggctgctgcatggatgaacttacgtaagaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9733 aaccctgagctttctgttcgcgacggaccggctgctgcatggatgaacttacgtaagaac 9792
Query: 386 aaaaatttattcatcaacaaagagacgggaaaactgaacgtgaatgaagttgtttattct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9793 aaaaatttattcatcaacaaagagacgggaaaactgaacgtgaatgaagttgtttattct 9852
Query: 446 attatcccaacaaacgtcgacatggcagtgaaatctctgaattacatacacggtggtagg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9853 attatcccaacaaacgtcgacatggcagtgaaatctctgaattacatacacggtggtagg 9912
Query: 506 gaacagattgatagagccgctctggaggctgggtctaataataaaacatcttctcatgtc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9913 gaacagattgatagagccgctctggaggctgggtctaataataaaacatcttctcatgtc 9972
Query: 566 tatgataaattacttgctcgaggttatgtcgattcggaaacttttgttacctcagatcat 625
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 9973 tatgataaattacttgctcgaggttatgtcgattcggaaactttgtttacatcagatcat 10032
Query: 626 ttcaagggaggcataccagaggatgcaaatatcgacctcccgaaaagaaaacggagaaag 685
| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 10033 tcaaaggaaggcataccagaggatgcaaatatcgaactcccgaaaagaaaacggagaaag 10092
Query: 686 atgttgtcgcccaatgaagcacgtgggttttcttaatagcaggtcaaatacaacaattct 745
|||||||||||||||||||||||| ||| ||| |||||||| |||||||||||||| |||
Sbjct: 10093 atgttgtcgcccaatgaagcacgt-ggtattcctaatagca-gtcaaatacaacaa-tct 10149
Query: 746 gattcgaatggtccagattatggccaattcc 776
|||||| |||||||||| ||| |||||||||
Sbjct: 10150 gattcg-atggtccaga-tattgccaattcc 10178
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6382
Number of Sequences: 1807
Number of extensions: 6382
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)