BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZH06RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1706 1245 0.0
>3x_Contig1706
Length = 16303
Score = 1245 bits (628), Expect = 0.0
Identities = 698/711 (98%), Gaps = 8/711 (1%)
Strand = Plus / Plus
Query: 50 taagattcttcgtcattgatataccacaagatgtggtatatcccaacatatcatcaattt 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 taagattcttcgtcattgatataccacaagatgtggtatatcccaacatatcatcaattt 366
Query: 110 ggtttctgattgtgttagtagaattacttgctaagcacataaggacatcatcccaatcct 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggtttctgattgtgttagtagaattacttgctaagcacataaggacatcatcccaatcct 426
Query: 170 caaataagggcctattctgtgaattgaatacctctccactgaactgaatgctgagtttag 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 caaataagggcctattctgtgaattgaatacctctccactgaactgaatgctgagtttag 486
Query: 230 ttggtaaactgggtaaatggtcatttaaatcgtaccttccatcctggaaaatacccctaa 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttggtaaactgggtaaatggtcatttaaatcgtaccttccatcctggaaaatacccctaa 546
Query: 290 tatcagcaaaatcggtataggaatcatccatgagaagttcataaaataatttgcgtccca 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tatcagcaaaatcggtataggaatcatccatgagaagttcataaaataatttgcgtccca 606
Query: 350 attctatgaaagcttcgtccacactggctttctcaactaaatcgtattcatcttgaaata 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 attctatgaaagcttcgtccacactggctttctcaactaaatcgtattcatcttgaaata 666
Query: 410 atttgatgagtttgcgactttctcttctgtacggttctaaggcaactttatagtttgttg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 atttgatgagtttgcgactttctcttctgtacggttctaaggcaactttatagtttgttg 726
Query: 470 gacttaactttttactctcgtcttctacccatgatccgcacccatcatggtactgccaat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gacttaactttttactctcgtcttctacccatgatccgcacccatcatggtactgccaat 786
Query: 530 agtcttcccctttacggaaaacagctgtgtgtatcggaatgattttatcacactttttta 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 agtcttcccctttacggaaaacagctgtgtgtatcggaatgattttatcacactttttta 846
Query: 590 tcgcatcaagtatgctcttcatgcgggacacattatacttttcgagctgcataggaaacg 649
|||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 847 tcgcatcaagtatgctctccatgcgggacacattatac-tttcgagctgcataagaaacg 905
Query: 650 gctaaaatactagtccattgtactgcaactatccggatcattcccttgaaanacccgcat 709
||||||||||||||||||||||||||||||| |||||||| |||||||||| | ||||||
Sbjct: 906 gctaaaatactagtccattgtactgcaacta-ccggatca-tcccttgaaaaa-ccgcat 962
Query: 710 tgttacctgtttttacctgtgcaaaaaaaggcattgacattcaatgtgtgc 760
| |||||| || ||||||||| |||||||||||||||| |||||||||||
Sbjct: 963 cg-tacctg-ttctacctgtgc-aaaaaaggcattgaca-tcaatgtgtgc 1009
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8293
Number of Sequences: 1807
Number of extensions: 8293
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)