BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZH07FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 894 0.0
>3x_Contig1666
Length = 16162
Score = 894 bits (451), Expect = 0.0
Identities = 488/499 (97%), Gaps = 1/499 (0%)
Strand = Plus / Plus
Query: 83 gcttcttacaataatcgcatgccttgacacctcgcgtacctcttttcgctggtgttttct 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1999 gcttcttacaataatcgcatgccttgacacctcgcgtacctcttttcgctggtgttttct 2058
Query: 143 tagctatcttattttgtccagtgctcattaatgaagagtgctatgattccttgtaatatt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2059 tagctatcttattttgtccagtgctcattaatgaagagtgctatgattccttgtaatatt 2118
Query: 203 atagtaagaaaaagcactgtcaaggacaaaaaaaatcttcgtttttcaaggaggaactgt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2119 atagtaagaaaaagcactgtcaaggacaaaaaaaatcttcgtttttcaaggaggaactgt 2178
Query: 263 aatatctaccaatattcaactcctacgctctctcctaccatgtaacgactactggagatg 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2179 aatatctaccaatattcaactcctacgctctctcctaccatgtaacgactactggagatg 2238
Query: 323 tgctccgtatacctttgtatatgtaaatctggctaatcgaactaatttcaagatgcattt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2239 tgctccgtatacctttgtatatgtaaatctggctaatcgaactaatttcaagatgcattt 2298
Query: 383 gtgtttctttttgacaaatttcacggtttaaatggataaagaggttacaatcacaggaaa 442
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2299 gtgtttctttttgacaaatttcacggtataaatggataaagaggttacaatcacaggaaa 2358
Query: 443 aaaacgatatacattacgaaaataggtggtagactactttaactggtctcaatcattgca 502
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 aaaacgatatacatcacgaaaataggtggtagactactttaactggtctcaatcattgca 2418
Query: 503 taatattttttagcttgacactactggtcgccttaaaaattggtatc-aacccacttttt 561
||||||| || |||||||||||||||||||||| ||||||||| ||| |||| ||| ||
Sbjct: 2419 taatattcttcagcttgacactactggtcgcctcaaaaattggcatcgaaccagcttctt 2478
Query: 562 atttccactttttacttat 580
||| |||||||||||||||
Sbjct: 2479 attaccactttttacttat 2497
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9855
Number of Sequences: 1807
Number of extensions: 9855
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)