BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZH07RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1449 906 0.0
>3x_Contig1449
Length = 7865
Score = 906 bits (457), Expect = 0.0
Identities = 499/513 (97%)
Strand = Plus / Plus
Query: 45 gctttggcgtagagcttgcacttttagacggtttagcaagtgtaggtggtgcatgtgagt 104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6739 gctttggcgtagagcttgcacttgtagacggtttagcaagtgtaggtggtgcatgtgagt 6798
Query: 105 gatgggcatgttccttcctggcattgttgaaagcatccgcttcttcccctggttcatgta 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799 gatgggcatgttccttcctggcattgttgaaagcatccgcttcttcccctggttcatgta 6858
Query: 165 aaaacatacagttcggatttggacatggttgtcccctcaaatacgaggagcatttctttg 224
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 6859 aaaacatacagttcggatttggacatggttgtcccctcaaatacgaggagcagtactttg 6918
Query: 225 ttgtaccatatgctgctttcacttgatgtccatcaatatagataccatctatggcttgaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6919 ttgtaccatatgctgctttcacttgatgtccatcaatatagataccatctatggcttgaa 6978
Query: 285 tacattttgctgcatcgtcttttctggaaaaagtaacgtaaataccgtaacctgaattta 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6979 tacattttgctgcatcgtcttttctggaaaaagtaacgtaaataccgtaacctgaattta 7038
Query: 345 tatgactcgatgaatttgaaacagaatggtgctcgtgtccagtcttcttattgatgacga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7039 tatgactcgatgaatttgaaacagaatggtgctcgtgtccagtcttcttattgatgacga 7098
Query: 405 tcttgttaatttttccatactggccaaaatacttgtccgatctcaagatggatggaagtt 464
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7099 tcttgttaattttttcatactggccaaaatacttgtccgatctcaagatggatggaagtt 7158
Query: 465 cttcgtaagggtaaggtggattcaacccatatacgtaaaccaaattcttctgaatgatcc 524
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 7159 cttcgtaagggtaaggtggattcaacccaataacgtaaaccaaattcttctgaatgaccc 7218
Query: 525 tttttcccaccagctgtttcctattatgagtgt 557
| | || | ||||||||||||||||||||||
Sbjct: 7219 tcataccagcaagctgtttcctattatgagtgt 7251
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9571
Number of Sequences: 1807
Number of extensions: 9571
Number of successful extensions: 127
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)