BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZH08FM1.SCF screened BAC_end
         (966 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1786                                                         985   0.0  

>3x_Contig1786 
          Length = 33838

 Score =  985 bits (497), Expect = 0.0
 Identities = 591/616 (95%), Gaps = 6/616 (0%)
 Strand = Plus / Plus

                                                                        
Query: 93   atagatcatgaattgagaaagtatgacgaacatcttgctcaacgtgaacctatgtcttcg 152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5547 atagatcatgaattgagaaagtatgacgaacatcttgctcaacgtgaacctatgtcttcg 5606

                                                                        
Query: 153  tatatcgaacagttctggtttgattcgtaccttgaatacgacgaatcagttgttttgaat 212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5607 tatatcgaacagttctggtttgattcgtaccttgaatacgacgaatcagttgttttgaat 5666

                                                                        
Query: 213  ttgaacttttatttccagttagctgatgatccaaccatgaacaatgtgccaaaagtcagt 272
            ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5667 ttgaacccttatttccagttagctgatgatccaaccatgaacaatgtgccaaaagtcagt 5726

                                                                        
Query: 273  tccagattctctcacttcaacaggcaagtcaagagaacatccaaattagtggtatcgatg 332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5727 tccagattctctcacttcaacaggcaagtcaagagaacatccaaattagtggtatcgatg 5786

                                                                        
Query: 333  ttgaaattcgttaaagcgatcagaactggtaccttgcctactgacaacgtaaggggcaaa 392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5787 ttgaaattcgttaaagcgatcagaactggtaccttgcctactgacaacgtaaggggcaaa 5846

                                                                        
Query: 393  tcaatgaccatggatcaatatggtaagttgttcggaagttctagattgccaccttctttg 452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5847 tcaatgaccatggatcaatatggtaagttgttcggaagttctagattgccaccttctttg 5906

                                                                        
Query: 453  aacgattctactttatcgtcgtgtcatttacagactgatcccacctcacaccatgttgtc 512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5907 aacgattctactttatcgtcgtgtcatttacagactgatcccacctcacaccatgttgtc 5966

                                                                        
Query: 513  atcatgttccaagtccaaattctactggtttgacgtcttggatatcaataaccaacctat 572
            |||||| | ||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5967 atcatg-tacaagtcccaattctactggtttgacgtcttggatatcaataacgaacctat 6025

                                                                        
Query: 573  ctttcaacacccggaggaattggaatggaatttggatttcattcataatggaatcttgaa 632
            ||||||||| |||||||||||||||||||||||| | |||| |||||||||| || ||| 
Sbjct: 6026 ctttcaacaaccggaggaattggaatggaatttgta-ttcaatcataatggattc-tgag 6083

                                                                        
Query: 633  cagaacagttttggaatcaaattcttcaaaataccttgcccatggggtgtttttacaacc 692
            |||||||||||  | |||||| ||||||||||| ||  ||||| ||||||||| ||||||
Sbjct: 6084 cagaacagttt--ggatcaaaatcttcaaaatagctgccccat-gggtgttttcacaacc 6140

                            
Query: 693  caaaaccgacctgtgt 708
             ||||| ||| |||||
Sbjct: 6141 gaaaacagacgtgtgt 6156


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7235
Number of Sequences: 1807
Number of extensions: 7235
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)