BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC28ZH08FM1.SCF screened BAC_end (966 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1786 985 0.0 >3x_Contig1786 Length = 33838 Score = 985 bits (497), Expect = 0.0 Identities = 591/616 (95%), Gaps = 6/616 (0%) Strand = Plus / Plus Query: 93 atagatcatgaattgagaaagtatgacgaacatcttgctcaacgtgaacctatgtcttcg 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5547 atagatcatgaattgagaaagtatgacgaacatcttgctcaacgtgaacctatgtcttcg 5606 Query: 153 tatatcgaacagttctggtttgattcgtaccttgaatacgacgaatcagttgttttgaat 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5607 tatatcgaacagttctggtttgattcgtaccttgaatacgacgaatcagttgttttgaat 5666 Query: 213 ttgaacttttatttccagttagctgatgatccaaccatgaacaatgtgccaaaagtcagt 272 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5667 ttgaacccttatttccagttagctgatgatccaaccatgaacaatgtgccaaaagtcagt 5726 Query: 273 tccagattctctcacttcaacaggcaagtcaagagaacatccaaattagtggtatcgatg 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5727 tccagattctctcacttcaacaggcaagtcaagagaacatccaaattagtggtatcgatg 5786 Query: 333 ttgaaattcgttaaagcgatcagaactggtaccttgcctactgacaacgtaaggggcaaa 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5787 ttgaaattcgttaaagcgatcagaactggtaccttgcctactgacaacgtaaggggcaaa 5846 Query: 393 tcaatgaccatggatcaatatggtaagttgttcggaagttctagattgccaccttctttg 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5847 tcaatgaccatggatcaatatggtaagttgttcggaagttctagattgccaccttctttg 5906 Query: 453 aacgattctactttatcgtcgtgtcatttacagactgatcccacctcacaccatgttgtc 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5907 aacgattctactttatcgtcgtgtcatttacagactgatcccacctcacaccatgttgtc 5966 Query: 513 atcatgttccaagtccaaattctactggtttgacgtcttggatatcaataaccaacctat 572 |||||| | ||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 5967 atcatg-tacaagtcccaattctactggtttgacgtcttggatatcaataacgaacctat 6025 Query: 573 ctttcaacacccggaggaattggaatggaatttggatttcattcataatggaatcttgaa 632 ||||||||| |||||||||||||||||||||||| | |||| |||||||||| || ||| Sbjct: 6026 ctttcaacaaccggaggaattggaatggaatttgta-ttcaatcataatggattc-tgag 6083 Query: 633 cagaacagttttggaatcaaattcttcaaaataccttgcccatggggtgtttttacaacc 692 ||||||||||| | |||||| ||||||||||| || ||||| ||||||||| |||||| Sbjct: 6084 cagaacagttt--ggatcaaaatcttcaaaatagctgccccat-gggtgttttcacaacc 6140 Query: 693 caaaaccgacctgtgt 708 ||||| ||| ||||| Sbjct: 6141 gaaaacagacgtgtgt 6156 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7235 Number of Sequences: 1807 Number of extensions: 7235 Number of successful extensions: 56 Number of sequences better than 1.0e-20: 1 length of query: 966 length of database: 10,358,551 effective HSP length: 16 effective length of query: 950 effective length of database: 10,329,639 effective search space: 9813157050 effective search space used: 9813157050 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)