BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZH08RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1740 1237 0.0
>3x_Contig1740
Length = 21823
Score = 1237 bits (624), Expect = 0.0
Identities = 693/712 (97%), Gaps = 3/712 (0%)
Strand = Plus / Plus
Query: 44 gcttacgattactacgtcaaactttttaaaagaacagatgtcatgaaacctttgagtaaa 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 21018 gcttacgattactacgtcaaacttcttaaaagaacagatgtcatgaaacctttgagtaaa 21077
Query: 104 gccgaatttttcgaaagttgttatagtttacaatccagtggagtggctcttatagagttc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21078 gccgaatttttcgaaagttgttatagtttacaatccagtggagtggctcttatagagttc 21137
Query: 164 accaaaaagaaattattaccatctggtgccgccaaaaccatcaaatcaacagtcattgtc 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 21138 accaaaaagaaattattaccatctggtgccgccaaaaccatcaaatcaacagtcattggc 21197
Query: 224 acagaattgcaagaagagatcagtaaaattgatctattaaaaagactcttatagctgatt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21198 acagaattgcaagaagagatcagtaaaattgatctattaaaaagactcttatagctgatt 21257
Query: 284 ctccctcaattgatatctaattatcattaaaagcaataaactttatagaaggaagttgat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21258 ctccctcaattgatatctaattatcattaaaagcaataaactttatagaaggaagttgat 21317
Query: 344 ccaattcacgtctaaccatacgtgtatgttccgtgattatatactctcatacttcaatag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21318 ccaattcacgtctaaccatacgtgtatgttccgtgattatatactctcatacttcaatag 21377
Query: 404 ttttccccaacataataccttaatcgacgaagaggtatagttgaaaccaaagcttaaagt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21378 ttttccccaacataataccttaatcgacgaagaggtatagttgaaaccaaagcttaaagt 21437
Query: 464 cacgtgattaattattttttcctggatcagatatgaggtggaagttttactgttactcaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21438 cacgtgattaattattttttcctggatcagatatgaggtggaagttttactgttactcaa 21497
Query: 524 atgtttcaagggtctgattaactgaaattccttaaggagtctgagatccactggcctgaa 583
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 21498 atgtttcaagggtctgattaactgaaattcctaagggagtctgagatccactggcctgaa 21557
Query: 584 actggt-atcctcagtttgatgagcagagtc-tgagaaggttcatttgctgcacttttct 641
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 21558 actggtaatcctcagtttgatgagcagagtcttgagaaggttcatttgctgcacttttct 21617
Query: 642 ccaaaatttcttagaaagagctttgaataat-accttatttacctaccataaaatgaacg 700
||||||| ||| ||||||||||||||||||| || ||||| || || |||||||||||
Sbjct: 21618 ccaaaatctctaagaaagagctttgaataataactttattaactaacaataaaatgaaca 21677
Query: 701 gattatttgggtatggaaatcggaagacacatgagcaaatgatccaggattc 752
|| |||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 21678 gaatatttgggtatggaaatcggaagacacatgagcagatgatgcaagattc 21729
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7868
Number of Sequences: 1807
Number of extensions: 7868
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)