BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZH09RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1464 1372 0.0
>3x_Contig1464
Length = 11693
Score = 1372 bits (692), Expect = 0.0
Identities = 805/830 (96%), Gaps = 11/830 (1%)
Strand = Plus / Minus
Query: 44 cttatagattcttcaatgttttgtatttcccaatttggtcaaaatgtaaatacatagaac 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 4724 cttatagattcttcaatgttttgaatttcccaatttggtcaaaatgtaaatacatagaac 4665
Query: 104 atcgatcaaaactggaaaaccgaacaaaagcagagtagtagaattaccttcaacaactct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4664 atcgatcaaaactggaaaaccgaacaaaagcagagtagtagaattaccttcaacaactct 4605
Query: 164 ctgttgaatgccctttatccatcataaccagcgccacaaacatcgatgacttagtc--at 221
|||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 4604 ctgttgaatgccctttatccatcataaccagcgccacaaacatcgatgacaagatgcaaa 4545
Query: 222 caacacctgtatcggaagtaccagaccctactgactgtttaagattgacaccggttaact 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4544 caacacctgtatcggaagtaccagaccctactgactgtttaagattgacaccggttaact 4485
Query: 282 tgaaaactttaagatcacctctaaagcaaggtcagatgaatattgagacaaatgacagct 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4484 tgaaaactttaagatcacctctaaagcaaggtcagatgaatattgagacaaatgacagct 4425
Query: 342 tatacaaagaaaactttaatcttatatcccgacaactacaaaacctattgagtgaacttg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4424 tatacaaagaaaactttaatcttatatcccgacaactacaaaacctattgagtgaacttg 4365
Query: 402 atgtgatatatcgagaggttggatactcgaatatagagatatcaaggaaggagaaacaga 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4364 atgtgatatatcgagaggttggatactcgaatatagagatatcaaggaaggagaaacaga 4305
Query: 462 ttttccacaatctatcaaattcgatttcgaagttcttcgatgaggctaatgcggaacgag 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4304 ttttccacaatctatcaaattcgatttcgaagttcttcgatgaggctaatgcggaacgag 4245
Query: 522 atatgcttacaaaagaatatcaggttggtcaacatagcctacagtgtatgcttaatgcca 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4244 atatgcttacaaaagaatatcaggttggtcaacatagcctacagtgtatgcttaatgcca 4185
Query: 582 tcaatgatccgaaaggagtatatacgatacccgatctggttatgagaaacagtgtactgg 641
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4184 tcaatgatccgaaaggagtatatacgatacccgatctgtttatgagaaacagtgtactgg 4125
Query: 642 agacatctgctcaagcaattatagatgacaactgttcaagtcctcaaagaacatcagcct 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4124 agacatctgctcaagcaattatagatgacaactgttcaagtcctcaaagaacatcagcct 4065
Query: 702 cactacttaacaaaattgaaacgctcaataatgtgaaagattnttgttatgaacgcttat 761
|||||||||||||| | ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 4064 cactacttaacaaattgaaaacgctcaataatgtgaaag-tttttgttatgaacgcttat 4006
Query: 762 ttaccctaagtttatggatcatttatcccactgtcatgaaactaccacatttngatggga 821
||| |||||||||||||||||||||| |||||||||||||||||| |||||| ||| |||
Sbjct: 4005 tta-cctaagtttatggatcatttat-ccactgtcatgaaactacgacattt-gat-gga 3950
Query: 822 taaagtcccccgatatgggaagatccaaattttacctggccaacctagct 871
|||||| ||||||||| ||||||| |||||| ||||| ||||||||||||
Sbjct: 3949 taaagt-ccccgatat-ggaagat-caaattctacct-gccaacctagct 3904
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7054
Number of Sequences: 1807
Number of extensions: 7054
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)