BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZH10RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig521 894 0.0
>3x_Contig521
Length = 2327
Score = 894 bits (451), Expect = 0.0
Identities = 517/535 (96%), Gaps = 3/535 (0%)
Strand = Plus / Plus
Query: 44 cttgttcgtcactttaataatatttgtaacagcatgagcagtagccactgctattactat 103
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 1299 cttgttcgtcactttaataataatagtaacagcatgagcagtagccactgctattactat 1358
Query: 104 acctagttttagtgatgattgagatttagcagcaggaagtatggatttgagaagaattct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 acctagttttagtgatgattgagatttagcagcaggaagtatggatttgagaagaattct 1418
Query: 164 tatcataatgtttcgtggttttggggttcgcttcttttcttttgaatgatgttttataat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 tatcataatgtttcgtggttttggggttcgcttcttttcttttgaatgatgttttataat 1478
Query: 224 ttgcgatcgagggcaagtcatctcgggacatgcctagttccattatgggagtcttgtggt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 ttgcgatcgagggcaagtcatctcgggacatgcctagttccattatgggagtcttgtggt 1538
Query: 284 atgcgaataactttcggtctgactattatagaaaagaatcctttcattacaacacattca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 atgcgaataactttcggtctgactattatagaaaagaatcctttcattacaacacattca 1598
Query: 344 ttataactaattcttctctttctttcacctcagcagaggtgaggagataattatcgtgta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 ttataactaattcttctctttctttcacctcagcagaggtgaggagataattatcgtgta 1658
Query: 404 cttctgcacctagtcatgttccaattgtgatcatacttatatattccaccatatttctca 463
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1659 cttctgcacctagtcatgttccaattgtgatcatacttatatatacca-catatttctca 1717
Query: 464 agtatgggaggataaaccgaacctttactatcttttccagatgaaaacagttgcctaacg 523
|||| |||||||||| |||||| | ||||||||| | ||||||||||||||||||||||
Sbjct: 1718 ggtat-ggaggataaagcgaaccataactatctttacgagatgaaaacagttgcctaacg 1776
Query: 524 ttgatttcattttaaaatt-ttaaacttacaaccaccaagatctcctctgatttc 577
|||||||||| | |||||| | ||||| |||| ||||||||||| ||||||||||
Sbjct: 1777 ttgatttcatatgaaaattataaaactaacaaacaccaagatctactctgatttc 1831
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,130
Number of Sequences: 1807
Number of extensions: 10130
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)