BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZH11RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1411 0.0
>3x_Contig1640
Length = 15521
Score = 1411 bits (712), Expect = 0.0
Identities = 774/787 (98%), Gaps = 6/787 (0%)
Strand = Plus / Plus
Query: 47 cttagagagacgaaagtaggggtcgtagtcaaccaatttaagaaatcttccaatccagac 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cttagagagacgaaagtaggggtcgtagtcaaccaatttaagaaatcttccaatccagac 525
Query: 107 atcgtcaaattggtgaagaagatgattttatcctggaaagatgctgtggctcgtgaaaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atcgtcaaattggtgaagaagatgattttatcctggaaagatgctgtggctcgtgaaaag 585
Query: 167 aaaagcaaactaagcagcaattcctcatctacaagtaacaataatggtacaagcggtgga 226
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 586 aaaagcaaactaagcagcaattcctcatctacaagtaccaataatggtacaagcggtgga 645
Query: 227 gaagcagtaaagaaggagaaatatgtcagcaaagctccaagaaatgctaagaacgacggt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gaagcagtaaagaaggagaaatatgtcagcaaagctccaagaaatgctaagaacgacggt 705
Query: 287 gtgaaaacggatatatatggtgtcaagattagagatatggctattagggcattatatgat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gtgaaaacggatatatatggtgtcaagattagagatatggctattagggcattatatgat 765
Query: 347 gcattggcaaaagaaagtgaacatcctccagtagctatcctagatacagtaatgagtatt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gcattggcaaaagaaagtgaacatcctccagtagctatcctagatacagtaatgagtatt 825
Query: 407 gagacagaaatggctaatctgttcaatcccgagtctgacgaaaagggatatcgtgacaaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gagacagaaatggctaatctgttcaatcccgagtctgacgaaaagggatatcgtgacaaa 885
Query: 467 tacagaataatttactcaaatataatctccaagaacaatccagatttgaaacatagaatt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tacagaataatttactcaaatataatctccaagaacaatccagatttgaaacatagaatt 945
Query: 527 acgaatggagaagtatcagccaaacatttagtgactgctgatcctaaggacttggcaccg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 acgaatggagaagtatcagccaaacatttagtgactgctgatcctaaggacttggcaccg 1005
Query: 587 gaacatttaaagaagaaaattgaggaaattgagaaacagaattttgtttaatgcacaagg 646
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1006 gaacatttaaagaagaaaattgaggaaattgagaaacagaa-tttgtttaatgcacaagg 1064
Query: 647 tgcaactgtagaaagatcagtaacagatagattccaatgtggcaaatggtaacaaagaaa 706
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1065 tgcaactgtagaaagatcagtaacagatagattccaatgtggcaaatgtaaacaaagaaa 1124
Query: 707 agtatcatactaccaactacaaacaagatctgcggatgaacctcttactactttttggta 766
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1125 agtatcatactaccaactacaaacaagatctgcggatgaacctcttactacttttt-gta 1183
Query: 767 catgttgagaattcnggtaatagaatggaagattcttgtagttggaaattctcactttga 826
|||| |||||||| |||||||| ||||||| |||| |||||| ||||||||||||||||
Sbjct: 1184 catg-tgagaattgcggtaatag-atggaag-ttctcgtagtt-gaaattctcactttga 1239
Query: 827 aatttac 833
| |||||
Sbjct: 1240 attttac 1246
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8054
Number of Sequences: 1807
Number of extensions: 8054
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)