BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZH12FM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1082 0.0
>3x_Contig1686
Length = 15382
Score = 1082 bits (546), Expect = 0.0
Identities = 624/642 (97%), Gaps = 6/642 (0%)
Strand = Plus / Plus
Query: 84 agtccagaaatgaaggaatctgatacgcattttgctgctaccgcttaggtgaattcaagt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 agtccagaaatgaaggaatctgatacgcattttgctgctaccgcttaggtgaattcaagt 2418
Query: 144 gaacctgcatttgaacagtatagaaatatgtcagattcacccaatgaaattcttcaatat 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 gaacctgcatttgaacagtatagaaatatgtcagattcacccaatgaaattcttcaatat 2478
Query: 204 agggatagtcctgttttctaagattgctgcgatgctatatctcaagatttatttgaattg 263
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 agggatagtcctgagttcgaagattgctgcgatgctatatctcaagatttatttgaattg 2538
Query: 264 aacgggagcctttcaactatgaaccactttgtaacggctttggaaacgaatgtatcccac 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 aacgggagcctttcaactatgaaccactttgtaacggctttggaaacgaatgtatcccac 2598
Query: 324 ggtaaatctaacactaaagttatcgacaatatcaataagaagacggttgaactaatagac 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 ggtaaatctaacactaaagttatcgacaatatcaataagaagacggttgaactaatagac 2658
Query: 384 aaaagtacaaaattagtatcatcgataaacgagaatattcataaagttaatgagttagag 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 aaaagtacaaaattagtatcatcgataaacgagaatattcataaagttaatgagttagag 2718
Query: 444 gagtcggctttggataagcctcatttgatcacaagggagaagttgactagggatgcgaaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2719 gagtcggctttggataagcctcatttgatcacaagggagaagttgactagggatgcgaaa 2778
Query: 504 ttctctgtacaggaattcaagaaatatcaacaacattttcttgaagttacaaagcggata 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2779 ttctctgtacaggaattcaagaaatatcaacaacattttcttgaagttacaaagcggata 2838
Query: 564 aatgacatggccaaagtggcttttggaagatgaagaacaaaataatttccttgatggatt 623
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 2839 aatgacatggccaaagtggc-tttggaagatgaagaacaaaataa-ttccttgatggata 2896
Query: 624 ctgttttaagagaggaaagatgatgaacacccaaaaagaacacaggttgtttttagagcg 683
||||||||||||||| |||| ||||||||| ||||||||||||||| || || |||||||
Sbjct: 2897 ctgttttaagagagg-aagaagatgaacacgcaaaaagaacacagg-tggttatagagcg 2954
Query: 684 agaatcctataattaattgagaattttgcataccagcaacat 725
|||| || |||| ||| |||| | ||||||||||||||||||
Sbjct: 2955 agaa-ccaataaataa-tgaggaatttgcataccagcaacat 2994
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7777
Number of Sequences: 1807
Number of extensions: 7777
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)