BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC28ZH12RM1.SCF screened BAC_end (969 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1120 1118 0.0 >3x_Contig1120 Length = 3902 Score = 1118 bits (564), Expect = 0.0 Identities = 722/762 (94%), Gaps = 11/762 (1%) Strand = Plus / Plus Query: 47 ctttttctacaacagggattcaattttaggtataaccaccgtcaacttggatatcacaac 106 |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct: 387 ctttttctacaacagg-attcaaacacaggtataaccaccgtcaacttggatatcacaac 445 Query: 107 cgttggtgtaagaagcagcatcggaagccaagtataagtaagcaccgaccaattcttgtg 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 cgttggtgtaagaagcagcatcggaagccaagtataagtaagcaccgaccaattcttgtg 505 Query: 167 gcaaatcttcacgacccactggtgttagaccccaccagtgagcacgttgtttagnatgaa 226 ||||| ||||||||||||||||||||||||||||||||||||||||||||| || | ||| Sbjct: 506 gcaaagcttcacgacccactggtgttagaccccaccagtgagcacgttgttcagtaggaa 565 Query: 227 ctaaggaggatagcagagtatcagtgtaacctggtgatacagagttacatctgatcttac 286 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 566 cgaaggaggatagcagagtatcagtgtaacctggtgatacagagttacatctgatcttac 625 Query: 287 cagctggagaggtcaaaccagagaattcgacggcgaaacccttggccatgtgtcttactg 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 626 cagctggagaggtcaaaccagagaattcgacggcgaaacccttggccatgtgtcttactg 685 Query: 347 cagctttagaagcgttgtaacaggtttggtagtttggaacgttactgatgtaactagaca 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 686 cagctttagaagcgttgtaacaggtttggtagtttggaacgttactgatgtaactagaca 745 Query: 407 tagaagcagtcaagatcaaattaccgtggccttggttcttgaatacttcagcagcgtacc 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 746 tagaagcagtcaagatcaaattaccgtggccttggttcttgaatacttcagcagcgtacc 805 Query: 467 tgctacagtggtaagtaccttggacgttaacgtccatgactctgcgccacatttctgggg 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 806 tgctacagtggtaagtaccttggacgttaacgtccatgactctgcgccacatttctgggg 865 Query: 527 tggaaccatcgttcaagatagaaccgttagtccaggcaatacctgcgttagcaatgaatg 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 866 tggaaccatcgttcaagatagaaccgttagtccaggcaatacctgcgttagcaatgaatg 925 Query: 587 tgttaattgcacgaactgggaaatcttccaagatttttttcaaagaccaatttaacgtcg 646 |||||||||||||| |||||||||||||||||| || |||||||||| |||||||||||| Sbjct: 926 tgttaattgcacgacctgggaaatcttccaaga-ttctttcaaagacaaatttaacgtcg 984 Query: 647 tcagcggtgggaatatctactgggtatgacttggatttaattcccgtaaggttttgcttc 706 |||||| ||| |||||||||| ||||||||||||||| || |||||||| || |||| || Sbjct: 985 tcagcgttggtaatatctacttggtatgacttggattcaa-tcccgtaa-gtcttgc-tc 1041 Query: 707 aattggacggtaaagtttttggttggaagaggtttgtccaaaataatggacttttggaac 766 || ||||||| |||| || |||||||||| | | ||||||||||||| ||| | || | Sbjct: 1042 aaatggacgg-aaag-ttctggttggaag-gttctgtccaaaataat-gacatctg--aa 1095 Query: 767 ccacaaaatgcgaaaccctcacttaaagcgccacccatggca 808 |||||| | ||||||||||||| || ||||||||| |||||| Sbjct: 1096 ccacaagaagcgaaaccctcacatagagcgccaccaatggca 1137 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5558 Number of Sequences: 1807 Number of extensions: 5558 Number of successful extensions: 27 Number of sequences better than 1.0e-20: 1 length of query: 969 length of database: 10,358,551 effective HSP length: 16 effective length of query: 953 effective length of database: 10,329,639 effective search space: 9844145967 effective search space used: 9844145967 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)