BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZH12RM1.SCF screened BAC_end
         (969 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1120                                                        1118   0.0  

>3x_Contig1120 
          Length = 3902

 Score = 1118 bits (564), Expect = 0.0
 Identities = 722/762 (94%), Gaps = 11/762 (1%)
 Strand = Plus / Plus

                                                                        
Query: 47   ctttttctacaacagggattcaattttaggtataaccaccgtcaacttggatatcacaac 106
            |||||||||||||||| ||||||    |||||||||||||||||||||||||||||||||
Sbjct: 387  ctttttctacaacagg-attcaaacacaggtataaccaccgtcaacttggatatcacaac 445

                                                                        
Query: 107  cgttggtgtaagaagcagcatcggaagccaagtataagtaagcaccgaccaattcttgtg 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446  cgttggtgtaagaagcagcatcggaagccaagtataagtaagcaccgaccaattcttgtg 505

                                                                        
Query: 167  gcaaatcttcacgacccactggtgttagaccccaccagtgagcacgttgtttagnatgaa 226
            ||||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 506  gcaaagcttcacgacccactggtgttagaccccaccagtgagcacgttgttcagtaggaa 565

                                                                        
Query: 227  ctaaggaggatagcagagtatcagtgtaacctggtgatacagagttacatctgatcttac 286
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566  cgaaggaggatagcagagtatcagtgtaacctggtgatacagagttacatctgatcttac 625

                                                                        
Query: 287  cagctggagaggtcaaaccagagaattcgacggcgaaacccttggccatgtgtcttactg 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626  cagctggagaggtcaaaccagagaattcgacggcgaaacccttggccatgtgtcttactg 685

                                                                        
Query: 347  cagctttagaagcgttgtaacaggtttggtagtttggaacgttactgatgtaactagaca 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686  cagctttagaagcgttgtaacaggtttggtagtttggaacgttactgatgtaactagaca 745

                                                                        
Query: 407  tagaagcagtcaagatcaaattaccgtggccttggttcttgaatacttcagcagcgtacc 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746  tagaagcagtcaagatcaaattaccgtggccttggttcttgaatacttcagcagcgtacc 805

                                                                        
Query: 467  tgctacagtggtaagtaccttggacgttaacgtccatgactctgcgccacatttctgggg 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806  tgctacagtggtaagtaccttggacgttaacgtccatgactctgcgccacatttctgggg 865

                                                                        
Query: 527  tggaaccatcgttcaagatagaaccgttagtccaggcaatacctgcgttagcaatgaatg 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866  tggaaccatcgttcaagatagaaccgttagtccaggcaatacctgcgttagcaatgaatg 925

                                                                        
Query: 587  tgttaattgcacgaactgggaaatcttccaagatttttttcaaagaccaatttaacgtcg 646
            |||||||||||||| |||||||||||||||||| || |||||||||| ||||||||||||
Sbjct: 926  tgttaattgcacgacctgggaaatcttccaaga-ttctttcaaagacaaatttaacgtcg 984

                                                                        
Query: 647  tcagcggtgggaatatctactgggtatgacttggatttaattcccgtaaggttttgcttc 706
            |||||| ||| |||||||||| ||||||||||||||| || |||||||| || |||| ||
Sbjct: 985  tcagcgttggtaatatctacttggtatgacttggattcaa-tcccgtaa-gtcttgc-tc 1041

                                                                        
Query: 707  aattggacggtaaagtttttggttggaagaggtttgtccaaaataatggacttttggaac 766
            || ||||||| |||| || |||||||||| | | ||||||||||||| ||| | ||  | 
Sbjct: 1042 aaatggacgg-aaag-ttctggttggaag-gttctgtccaaaataat-gacatctg--aa 1095

                                                      
Query: 767  ccacaaaatgcgaaaccctcacttaaagcgccacccatggca 808
            |||||| | ||||||||||||| || ||||||||| ||||||
Sbjct: 1096 ccacaagaagcgaaaccctcacatagagcgccaccaatggca 1137


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5558
Number of Sequences: 1807
Number of extensions: 5558
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)