BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZA01FM1.SCF screened BAC_end
         (941 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1572                                                        1251   0.0  

>3x_Contig1572 
          Length = 12810

 Score = 1251 bits (631), Expect = 0.0
 Identities = 707/726 (97%), Gaps = 5/726 (0%)
 Strand = Plus / Plus

                                                                         
Query: 86    tttctcctttcgctacttcttcagatttaacaccgacagggtcgtcgaatagtgacacgt 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12036 tttctcctttcgctacttcttcagatttaacaccgacagggtcgtcgaatagtgacacgt 12095

                                                                         
Query: 146   caagtgcaatgttgtctaccagtgggacaacttcaagtcattcaaataatgaaaattcaa 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12096 caagtgcaatgttgtctaccagtgggacaacttcaagtcattcaaataatgaaaattcaa 12155

                                                                         
Query: 206   tatctttgaagtatttgg-tgattctcagcattctatagactcacaatccgatcatagca 264
             ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 12156 tatctttgaagtatgagggtgattctcagcattctatagactcacaatccgatcatagca 12215

                                                                         
Query: 265   atggaataaaatccatacagccaaatgccatgttggggaaacaatcttcggtaagtgatc 324
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12216 atggaataaaatccatacagccaaatgccatgttggggaaacaatcttcggtaagtgatc 12275

                                                                         
Query: 325   cattaaaccagttatccgaagatatttcattggacgtgacaggaaatattcaaggacatg 384
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12276 cattaaaccagttatccgaagatatttcattggacgtgacaggaaatattcaaggacatg 12335

                                                                         
Query: 385   atgctggtgttaaaccggtattatcggctgaaacaagttttaatacgtgttatgatgaag 444
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12336 atgctggtgttaaaccggtattatcggctgaaacaagttttaatacgtgttatgatgaag 12395

                                                                         
Query: 445   gatacgctttactaccagatttcttcgcagtaacatcagaagccaaagtggaactaccta 504
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12396 gatacgctttactaccagatttcttcgcagtaacatcagaagccaaagtggaactaccta 12455

                                                                         
Query: 505   ttgaatttccagacttgcaaaagtttttaccggtaaatcagtcagttgatcctgatattg 564
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12456 ttgaatttccagacttgcaaaagtttttaccggtaaatcagtcagttgatcctgatattg 12515

                                                                         
Query: 565   cttccagtgttaactccctataccaagtttattgtaatactttgtttgaaaatatacggt 624
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12516 cttccagtgttaactccctataccaagtttattgtaatactttgtttgaaaatatacggt 12575

                                                                         
Query: 625   tcatgaagtttgatgatctttcattancattgcaatcattttcatcgagttcaatatcat 684
             |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 12576 tcatgaagtttgatgatcttccattaacattgcaatcattttcatcgagttcaatatcat 12635

                                                                         
Query: 685   caaaaatgtacaacttgtttatttcttgagatttgtacagatgggttcaataatcagaac 744
             ||||||||||||||||||||||||||  ||| |||||||||||||||||  |||||| ||
Sbjct: 12636 caaaaatgtacaacttgtttatttctgaagaattgtacagatgggttcatcaatcag-ac 12694

                                                                         
Query: 745   ctacttacttacaagggctttgaacaagatgcttttcaagttttgattgttgacttcaac 804
             ||||||||| |||| |||| ||| |||||||| |||| || |||||||||||||||||||
Sbjct: 12695 ctacttactcacaa-ggctctgaccaagatgc-tttcgag-tttgattgttgacttcaac 12751

                   
Query: 805   caaatt 810
              |||||
Sbjct: 12752 gaaatt 12757


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7719
Number of Sequences: 1807
Number of extensions: 7719
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)