BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC29ZA02FM1.SCF screened BAC_end (1036 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1734 694 0.0 >3x_Contig1734 Length = 17938 Score = 694 bits (350), Expect = 0.0 Identities = 365/370 (98%) Strand = Plus / Plus Query: 90 taactgattggataattcagtgaaagtttgtcgttttgtgtgttagtttgtgcgtacgtg 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5550 taactgattggataattcagtgaaagtttgtcgttttgtgtgttagtttgtgcgtacgtg 5609 Query: 150 tctccttctgtcggcttctctcaacaagtcccgttgtctgaccagtatcacatatttata 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5610 tctccttctgtcggcttctctcaacaagtcccgttgtctgaccagtatcacatatttata 5669 Query: 210 gggtctttctttttcatggattagtaacccatatcaggtaacccatacagctagctatat 269 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5670 gggtctttcttttgcatggattagtaacccatatcaggtaacccatacagctagctatat 5729 Query: 270 tcaataatggaaaacaaacatatctcgcacgtctctcagattgaaagacgtgctactcct 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5730 tcaataatggaaaacaaacatatctcgcacgtctctcagattgaaagacgtgctactcct 5789 Query: 330 ttgaacattcgtccagcttcgccttataccttaaatcctactgtggaaaaagacggttta 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5790 ttgaacattcgtccagcttcgccttataccttaaatcctactgtggaaaaagacggttta 5849 Query: 390 tcatggcctagtattggtgctcgtgaaagagcagaggaaacggatgaagaataacaccga 449 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct: 5850 tcatggcctagtattggtgctcgtgaaagagcagaggaaacggatgaagaagaacaaaaa 5909 Query: 450 cgggttggtc 459 |||||||||| Sbjct: 5910 cgggttggtc 5919 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 22,613 Number of Sequences: 1807 Number of extensions: 22613 Number of successful extensions: 316 Number of sequences better than 1.0e-20: 1 length of query: 1036 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1020 effective length of database: 10,329,639 effective search space: 10536231780 effective search space used: 10536231780 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)