BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA02RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig696 973 0.0
>3x_Contig696
Length = 2788
Score = 973 bits (491), Expect = 0.0
Identities = 504/507 (99%), Gaps = 1/507 (0%)
Strand = Plus / Minus
Query: 52 gcttttaattacaaggatgatcaattttaaactcgataattttctttttcttaatgttta 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2571 gcttttaattacaaggatgatcaattttaaactcgataattttctttttcttaatgttta 2512
Query: 112 attgatacctttttccgtcatttttatgttgatcgttatctccttgtggttttctttttt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2511 attgatacctttttccgtcatttttatgttgatcgttatctccttgtggttttctttttt 2452
Query: 172 ttggcgatgtttaatctccttggacagactaattctaaattccttggacttttatttttc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2451 ttggcgatgtttaatctccttggacagactaattctaaattccttggacttttatttctc 2392
Query: 232 tttggaaattctatgataaacatttgatatcctttcaatgatactcttaatcaataataa 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2391 tttggaaattctatgataaacatttgatatcctttcaatgatactcttaatcaataataa 2332
Query: 292 actaatatattatatccatatattggcgaataaaaggaaaaaaaaatgaataatactatt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2331 actaatatattatatccatatattggcgaataaaaggaaaaaaaaatgaataatactatt 2272
Query: 352 aataatacatcatattatttttctgttttacaatactatgaaataaagaaaaaattgaca 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2271 aataatacatcatattatttttctgttttacaatactatgaaataaagaaaaaattgaca 2212
Query: 412 cattacagaataaattgattgattcattaattggctttttaatatcgctgttttcgtcga 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2211 cattacagaataaattgattgattcattaattggctttttaatatcgctgttttcgtcgt 2152
Query: 472 tttcttttctcccattttc-acatttctgacgtacgacgggaaattgaatttgttgcctt 530
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2151 tttcttttctcccattttcaacatttctgacgtacgacgggaaattgaatttgttgcctt 2092
Query: 531 ttgctgggtttggaactgctgtttttt 557
|||||||||||||||||||||||||||
Sbjct: 2091 ttgctgggtttggaactgctgtttttt 2065
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,077
Number of Sequences: 1807
Number of extensions: 34077
Number of successful extensions: 967
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)