BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA03FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1320 1362 0.0
>3x_Contig1320
Length = 7350
Score = 1362 bits (687), Expect = 0.0
Identities = 766/786 (97%), Gaps = 6/786 (0%)
Strand = Plus / Minus
Query: 85 ctgaaatcttcaccgatatctacgaagataagatctccaagtcccaaaacgcagaagtta 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3179 ctgaaatcttcaccgatatctacgaagataagatctccaagtcccaaaacgcagaagtta 3120
Query: 145 tctttagaaactacagattacaagtgaaatctcacatcacatcatcatacccggaactag 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3119 tctttagaaactacagattacaagtgaaatctcacatcacatcatcatacccggaactag 3060
Query: 205 cggagtggctaggtactgttggtagaatgaagttcgtccgtccaggataccgtttattga 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3059 cggagtggctaggtactgttggtagaatgaagttcgtccgtccaggataccgtttattga 3000
Query: 265 acgaagtggatcgtgagttggctatcaaaacgttccacagattcagagactcatatcatc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2999 acgaagtggatcgtgagttggctatcaaaacgttccacagattcagagactcatatcatc 2940
Query: 325 ccatctgcaaatctctcgtaaagcaagatttgggcatctaaatttccctgaattctatcc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2939 ccatctgcaaatctctcgtaaagcaagatttgggcatctaaatttccctgaattctatcc 2880
Query: 385 ataggtgtgtcatcagtattatttaaaaaaactaaagttacactttcatacctctctcat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2879 ataggtgtgtcatcagtattatttaaaaaaactaaagttacactttcatacctctctcat 2820
Query: 445 caatatatcgccattcaaggctgtagttcttttatattccttttcacgtgacttctcctt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2819 caatatatcgccattcaaggctgtagttcttttatattccttttcacgtgacttctcctt 2760
Query: 505 tttgtaccaagaatttctgcttatgtgttgtcatctttgaaaaaaaagtttgaatctgga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2759 tttgtaccaagaatttctgcttatgtgttgtcatctttgaaaaaaaagtttgaatctgga 2700
Query: 565 ttttcgcattaaatcacatatggagatcattgaaaagaagtctaacatgttaaattgaaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2699 ttttcgcattaaatcacatatggagatcattgaaaagaagtctaacatgttaaattgaaa 2640
Query: 625 agagttttggactgtaacagcagcagatcgagtgtgaaaatacccaagcttggcgaccat 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2639 agagttttggactgtaacagcagcagatcgagtgtgaaaatacccaagcttggcgaccat 2580
Query: 685 gaacaactttgctcagttatccgtatggttggtttttttctttttatgttttggcgttag 744
|||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||
Sbjct: 2579 gaacaactttgctcagttatccgtat-gtttgtttttttc-ttttatgttttggcgtaag 2522
Query: 745 tttttgatcacaacgtaaaacatttttgtttaaaggtttaagacaatggaaaaatataat 804
|||||||||| |||| |||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 2521 -ttttgatcac-acgttaaacatttttgtttaagggtttaagacaatgaaataatataat 2464
Query: 805 tcattggatgtgttatttaaggttggcatattcagcatactaaacgtttttattttgaaa 864
|||||| | |||||||| | |||||||||||||||||||||| ||||| || ||||||
Sbjct: 2463 tcattg--tatgttattttaagttggcatattcagcatactaacagttttcatcttgaaa 2406
Query: 865 gggaat 870
|||||
Sbjct: 2405 tggaat 2400
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9918
Number of Sequences: 1807
Number of extensions: 9918
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)