BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA03RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1600 1285 0.0
>3x_Contig1600
Length = 9359
Score = 1285 bits (648), Expect = 0.0
Identities = 724/743 (97%), Gaps = 6/743 (0%)
Strand = Plus / Plus
Query: 46 gctttatttcaacttcgtgttcgcaagtaggatatctcttttttt-aattaattaggaac 104
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5216 gctttatttcaacttcgtgttcgcaagtaggatatctctttttttcaattaattaggaac 5275
Query: 105 gttaacaaaaacagtcaattttgaatcgaagtttttgcctgttgtcgtcttagtttctga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5276 gttaacaaaaacagtcaattttgaatcgaagtttttgcctgttgtcgtcttagtttctga 5335
Query: 165 ctctactactatcaagtacttcttcttttgttccctttttttgtgagtaattttttattg 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5336 ctctactactatcaagtacttcttcttttgttccctttttttgtgagtaattttggattg 5395
Query: 225 aaaattcacaaagaagagccataaaaaaataaaaacaaaagaagatataaacgagaaaga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5396 aaaattcacaaagaagagccataaaaaaataaaaacaaaagaagatataaacgagaaaga 5455
Query: 285 ttcattgaaagttaatcatcgttgaaaagttcaacattttgtgaattgcaagggattttt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5456 ttcattgaaagttaatcatcgttgaaaagttcaacattttgtgaattgcaagggattttt 5515
Query: 345 ttacttgataactggatatatcaattttacaacacacgtacagaacaaagcgaccatcta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5516 ttacttgataactggatatatcaattttacaacacacgtacagaacaaagcgaccatcta 5575
Query: 405 ttgatttaaggtttgtgttttgcttctttcgttatacagaaaagaacaaaaaataactgt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5576 ttgatttaaggtttgtgttttgcttctttcgttatacagaaaagaacaaaaaataactgt 5635
Query: 465 cttttgaacaatgttgagaactataaggtcatctcagcgtttgttacatgcttctaaatt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5636 cttttgaacaatgttgagaactataaggtcatctcagcgtttgttacatgcttctaaatt 5695
Query: 525 caccaggatcggtgctgtaagcaaaccgacttccttggctgttttcagtcgtggattggc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5696 caccaggatcggtgctgtaagcaaaccgacttccttggctgttttcagtcgtggattggc 5755
Query: 585 tagtggtgcatcttcgacggacaacttcctgttcaccaccaatgcatcatatattgatga 644
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 5756 tagtggtgcatcttcgacggacaacttcctgtccaccaccaatgcatcatatatcgatga 5815
Query: 645 gatgtaccaagcttggcaaaa-gatcccacttcagtttatgtctcttgggatgcttattt 703
||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 5816 gatgtacgaagcttggcaaaaggatcccacttcagttcatgtctcttgggatgcttattt 5875
Query: 704 taagaacatgggtaatcttgaatttttcagcctttttttgccttcaccgccccaccaact 763
|||||||||||||||| ||||| || ||||| | || |||||||||||||||||||||
Sbjct: 5876 caagaacatgggtaatc-tgaatattccagcc-tcttctgccttcaccgccccaccaac- 5932
Query: 764 ttttaattccattaccaacgggt 786
||||||||| |||||||||||
Sbjct: 5933 -attaattccaataccaacgggt 5954
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9686
Number of Sequences: 1807
Number of extensions: 9686
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)