BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC29ZA04RM1.SCF screened BAC_end (918 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1361 1237 0.0 >3x_Contig1361 Length = 8765 Score = 1237 bits (624), Expect = 0.0 Identities = 768/804 (95%), Gaps = 9/804 (1%) Strand = Plus / Minus Query: 49 cggaactttaccaatcgtttgattttagtttcaaaacttcaacaaacttggagtgttggt 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5460 cggaactttaccaatcgtttgattttagtttcaaaacttcaacaaacttggagtgttggt 5401 Query: 109 ggtgaagtggaggcaagttgaacatcggtctaacacaaatagagactacgtcgtcaaata 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5400 ggtgaagtggaggcaagttgaacatcggtctaacacaaatagagactacgtcgtcaaata 5341 Query: 169 gttcatcaattagattttttagatcatcgcctgtttgtttgaagtctgggaatgcgttga 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5340 gttcatcaattagattttttagatcatcgcctgtttgtttgaagtctgggaatgcgttga 5281 Query: 229 cttccaataatttgacttgataatcggaatcaacaaggaaatcgaagccaaacgtctcca 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5280 cttccaataatttgacttgataatcggaatcaacaaggaaatcgaagccaaacgtctcca 5221 Query: 289 aactattcttcagtgggcggaaatttaggcgatcaacattaactgcagctttgaacagtt 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5220 aactattcttcagtgggcggaaatttaggcgatcaacattaactgcagctttgaacagtt 5161 Query: 349 cagaaactgcttcgtgaatttgagtcctaatttcttcccttctatgcgaaggaatatcct 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5160 cagaaactgcttcgtgaatttgagtcctaatttcttcccttctatgcgaaggaatatcct 5101 Query: 409 tcaaggcatcaaactcgatcacagaatttgatttaatatcatcatccgtttgcaagcaag 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5100 tcaaggcatcaaactcgatcacagaatttgatttaatatcatcatccgtttgcaagcaag 5041 Query: 469 tattagtcaaatgacaagctaattgctcaatatctaaaacgtcatattcttcggtaggtg 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5040 tattagtcaaatgacaagctaattgctcaatatctaaaacgtcatattcttcggtaggtg 4981 Query: 529 gtacaaattttgttgggagcgaaaagtgctagcattctatcattaacaaacacctgtaga 588 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 4980 gtacaaa-tttgttgggagcgaaaagtgctagcattctatcataaacaaacacctgtaga 4922 Query: 589 tcgccactgcagggtacataacatctgatatgaaa-ttccttgcatgtgcttcactccat 647 ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || Sbjct: 4921 tcgccactgcaggtaacataacatctgatatgaaatttcctgccatgtgcttcactcaat 4862 Query: 648 taaaga-gattgtgttagtattc-tggacgatgaaatggcgtatttgagaag-ggccact 704 ||||| |||||||| ||||||| ||||||||||||||||||| |||||||| ||||||| Sbjct: 4861 aaaagaggattgtgtaagtattcttggacgatgaaatggcgtaattgagaagtggccact 4802 Query: 705 ttattagtattcgtcccagtgtcctcattatcagtttaattcttttcaaacaattc-aaa 763 ||||||||||||||| |||||||||||| |||||||| || | ||||||| | || ||| Sbjct: 4801 ttattagtattcgtctcagtgtcctcatcatcagtttcatcttcttcaaacgagtcaaaa 4742 Query: 764 atagcttggaattggtcaaaagttttgaat-tgccggttccttggacccttat-acttat 821 |||||||| ||||| |||| |||||||||| ||| | | |||| ||||||||| ||| || Sbjct: 4741 atagcttgtaattgttcaatagttttgaatatgcggatacctt-gacccttatcactcat 4683 Query: 822 acttggctttaagacccaccattt 845 ||| ||||| |||| ||||||||| Sbjct: 4682 actaggcttcaagatccaccattt 4659 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,741 Number of Sequences: 1807 Number of extensions: 12741 Number of successful extensions: 87 Number of sequences better than 1.0e-20: 1 length of query: 918 length of database: 10,358,551 effective HSP length: 16 effective length of query: 902 effective length of database: 10,329,639 effective search space: 9317334378 effective search space used: 9317334378 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)