BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA05FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 1201 0.0
>3x_Contig1648
Length = 16375
Score = 1201 bits (606), Expect = 0.0
Identities = 649/662 (98%), Gaps = 1/662 (0%)
Strand = Plus / Minus
Query: 86 tgattctatcctca-gggcaatcttcacgatgttcgatactttattgcagatgaaatttt 144
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8467 tgattctatcctcaagggcaatcttcacgatgttcgatactttattgcagatgaaatttt 8408
Query: 145 cgaatgatataaagctaatcttttcaacgggaccgaacttggacagtagtaaattgatgg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8407 cgaatgatataaagctaatcttttcaacgggaccgaacttggacagtagtaaattgatgg 8348
Query: 205 atgggatatctaaatcatagtaagcatcatatttcactgtcttgatcttgtttaagttag 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8347 atgggatatctaaatcatagtaagcatcatatttcactgtcttgatcttgtttaagttag 8288
Query: 265 ttaagaacatgttttcgaactgatctctgacgacgtcattcaacatcaataaactttctt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8287 ttaagaacatgttttcgaactgatctctgacgacgtcattcaacatcaataaactttctt 8228
Query: 325 gcgcgtagatctttagcatttgatagctgttaacagacattttactcagtatgttaactt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8227 gcgcgtagatctttagcatttgatagctgttaacagacattttactcagtatgttaactt 8168
Query: 385 tggtggttttatcaaagattgtaggtgtttggaaaccttcttcaacgtattttgaggaag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8167 tggtggttttatcaaagattgtaggtgtttggaaaccttcttcaacgtattttgaggaag 8108
Query: 445 tgacagttgcagtagtgctatagtcggaatagaattgtaagtacccatcagtacaaagat 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8107 tgacagttgcagtagtgctatagtcggaatagaattgtaagtacccatcagtacaaagat 8048
Query: 505 ccattgtggccaaatatttgattacacctttgaataattggtaagatgagaacccatgca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8047 ccattgtggccaaatatttgattacacctttgaataattggtaagatgagaacccatgca 7988
Query: 565 ataaaattctgttaccatttaacccaccaccatttagtaaggctgccatcaacgtggcaa 624
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7987 ataaaattctgttaccattcaacccaccaccatttagtagggctgccatcaacgtggcaa 7928
Query: 625 acttcgaattttcaaaaccacccaacgcatctgaatgagacatatttgatgagaagcctt 684
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7927 actcgaaatttccaaaaccacccaacgcatctgaatgagacatatttgatgagaagcctc 7868
Query: 685 tttgagataaccatagctttccccaaatacaagcctgtttaaactggtctgtttggttct 744
| ||||||||||||||||| ||| |||||||||||||||||||||| |||||||| ||||
Sbjct: 7867 tctgagataaccatagcttccccaaaatacaagcctgtttaaactgttctgtttgtttct 7808
Query: 745 tt 746
||
Sbjct: 7807 tt 7806
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8813
Number of Sequences: 1807
Number of extensions: 8813
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)