BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA05RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1637 1285 0.0
>3x_Contig1637
Length = 14855
Score = 1285 bits (648), Expect = 0.0
Identities = 685/695 (98%), Gaps = 2/695 (0%)
Strand = Plus / Minus
Query: 47 ttgcaccagttttttcttttcttctctggccgtcttaagaccttcgtacaccgcctcgtt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3524 ttgcaccagttttttcttttcttctctggccgtcttaagaccttcgtacaccgcctcgtt 3465
Query: 107 acgcaatatttcataactatgtgccgctactcgtaggccttcgacgattttctttgaacc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3464 acgcaatatttcataactatgtgccgctactcgtaggccttcgacgattttctttgaacc 3405
Query: 167 ttcttcaaacttattattcttcttattaaccaattgaattaccaacttgtcatagaaatc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3404 ttcttcaaacttattattcttcttattaaccaattgaattaccaacttgtcatagaaatc 3345
Query: 227 ttgttcaaatccttttaatgcttcaaagtttttggatgtaatctcagtgacagttggaag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3344 ttgttcaaatccttttaatgcttcaaagtttttggatgtaatctcagtgacagttggaag 3285
Query: 287 agagtttatagtgagccaatccaagatgaagtccaaatttctggtttcagttgttgaata 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3284 agagtttatagtgagccaatccaagatgaagtccaaatttctggtttcagttgttgaata 3225
Query: 347 tccagggaatatgatcggagtaaacgtagatttcttgaatatgaagaacgttggtgattg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3224 tccagggaatatgatcggagtaaacgtagatttcttgaatatgaagaacgttggtgattg 3165
Query: 407 ggtaatggatgtcgtgataaaatggtcctcattaatttcagtgcgttgatcggtattata 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3164 ggtaatggatgtcgtgataaaatggtcctcattaatttcagtgcgttgatcggtattata 3105
Query: 467 atctttgtacagagtttgatagagagtatggcttaacttctttaggtcgtcagtgttctt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3104 atctttgtacagagtttgatagagagtatggcttaacttctttaggtcgtcagtgttctt 3045
Query: 527 gtacaagtaaatattanggatgtattccaatgggtcaatgagttgttccaaaaattgcat 586
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3044 gtacaagtaaatattagggatgtatcccaatgggtcaatgagttgttccaaaaattgcat 2985
Query: 587 atcctcagggacaacagtttccgggtttatattaaatacaagc-atattttatcggcttc 645
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 2984 atcctcagggacaacagtttccgggttataattaaatacaagcaatattttatcggcttc 2925
Query: 646 ggcatttgcttccaaaatgtcactttttgtttcttttacaaaagcttcgatcttatcctg 705
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 2924 ggcatttgcttccaaaatgtcactttttggttcttttacaaaagcttcgatctcatcctg 2865
Query: 706 atcaatatttggaacgttacctgttgggtaaagtt 740
||||||||||||||||||| |||||| ||||||||
Sbjct: 2864 atcaatatttggaacgtta-ctgttgtgtaaagtt 2831
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9355
Number of Sequences: 1807
Number of extensions: 9355
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)