BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA06RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1074 0.0
>3x_Contig1610
Length = 13981
Score = 1074 bits (542), Expect = 0.0
Identities = 650/678 (95%), Gaps = 6/678 (0%)
Strand = Plus / Minus
Query: 51 agcttctcttgattttgtgcattatgtatttatatgttttttct-actgaaaacaacttc 109
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 2454 agcttctcttgattttgtgcattaggtatttatatgttttttctcactgaaaacaacttc 2395
Query: 110 ctccagtttttgcttacatggcacgaaacttttcataatgaacggcattagtattcaggt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2394 ctccagtttttgcttacatggcacgaaacttttcataatgaacggcattagtattcaggt 2335
Query: 170 aagatctaacagctgatgcgttttttgctccaacagcaaacagaaaggacctatattcgt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 2334 aagatctaacagctgatgcgttttttgctccaacagcaaacagaaaggacctagaagcgt 2275
Query: 230 ctatttaactcgactagctttcttatcaaactgtcttcatttattgtcaaacccaaatga 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2274 ctatttaactcgactagctttcttatcaaactgtcttcatttattgtcaaacccaaatga 2215
Query: 290 tttattttgggcagattgaaacttcattggtcaaaacagctatagagcattgagtgaaac 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2214 tttattttgggcagattgaaacttcattggtcaaaacagctatagagcattgagtgaaac 2155
Query: 350 ctctactcgtaccttcgatgagccagttgggtttcaatatctagtcacgtgtgtttactt 409
||||||||| | | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2154 ctctactcgaaacatcgatgagccagttgggtttcaatatctagtcacgtgtgtgtactt 2095
Query: 410 aaactctcttcgcttttttgtctatgtccactaccctgatttcggatttggctggtgctt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2094 aaactctcttcgcttttttgtctatgtccactaccctgatttcggatttggctggtgctt 2035
Query: 470 tcctttttttctctgaaa-cagaattacatattttaaaaataatacaaatttaaatcacc 528
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 2034 tcctttttttctctgaaaccagaattacatattttaaaatcaatacaaatttaaatcacc 1975
Query: 529 actgtagccgttgataacaaccttgatccaaactgatctctgttcctttatcatcaaaat 588
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1974 actgaggccgttgataacaaccttgatccaaactgatctctgttcctttatcatcaaaat 1915
Query: 589 attcggat-cgttcgtagaataacttaatttcgat-aaaaggaatgtgtgacacttgttg 646
|||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct: 1914 attcggatacgttcgtagaataacttaatttcgataaaaaggagtgtgtgacactagttg 1855
Query: 647 aaactct-tttttttttttacccatttggtattgactgagcttttatttattttat-ttt 704
||||||| ||||||||||||| |||||| |||||||||||||||| |||||| || |||
Sbjct: 1854 aaactctctttttttttttacgcatttgttattgactgagcttttcattatttcatcttt 1795
Query: 705 tgagaccgggttaagaag 722
|||| | ||||||||||
Sbjct: 1794 tgagtactggttaagaag 1777
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,209
Number of Sequences: 1807
Number of extensions: 16209
Number of successful extensions: 131
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)