BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA07FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1577 1239 0.0
>3x_Contig1577
Length = 10627
Score = 1239 bits (625), Expect = 0.0
Identities = 712/734 (97%), Gaps = 6/734 (0%)
Strand = Plus / Minus
Query: 86 ctgatgaatcccgcgcctcggtgttttgaaccgcactcattcttggcgaattagaacctt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9646 ctgatgaatcccgcgcctcggtgttttgaaccgcactcattcttggcgaattagaacctt 9587
Query: 146 cttgcataccaatcttgccaagtttattggatgattttatagaactgctactagccacta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9586 cttgcataccaatcttgccaagtttattggatgattttatagaactgctactagccacta 9527
Query: 206 ccgaactgtccgaaaaagatgatttatccataaacgcccttctgaaccaacaatatagaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9526 ccgaactgtccgaaaaagatgatttatccataaacgcccttctgaaccaacaatatagaa 9467
Query: 266 atattcaagttgagattaatggtactctgttgtcagttcctcggaaaatttcaactactt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9466 atattcaagttgagattaatggtactctgttgtcagttcctcggaaaatttcaactactt 9407
Query: 326 gttcctattagcaaagcctatcaataactaatgtatcctttatttcccaaattcgttttt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9406 gttcctattagcaaagcctatcaataactaatgtatcctttatttcccaaattcgttttt 9347
Query: 386 taaagggttgaaccaactcttcctgtagctaaaaaaactagaaatcagtcttgcatcaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9346 taaagggttgaaccaactcttcctgtagctaaaaaaactagaaatcagtcttgcatcaaa 9287
Query: 446 ataagtgcgatgtcagggtttatatgcaaagaacaaatctcatcagtaataactacagtc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9286 ataagtgcgatgtcagggtttatatgcaaagaacaaatctcatcagtaataactacagtc 9227
Query: 506 ggcctttaggcgtctagataggtaggatcggacatgcaacggaacacctctttttacatc 565
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 9226 ggcc-ttaggcgtctagataggtaggatcggacatgcaacggaacacctcttttacaatc 9168
Query: 566 taaaatcagcatagaaataatgataatgggaaattgggaatataaacgttanattttcat 625
||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 9167 taaaatcagcatagaaataatgataatgggaaattggaaatataaacg-taaattttcat 9109
Query: 626 acacanagagctatttatanggattangagcagtaagtggtggggaacaagccctgtgtc 685
||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 9108 acaca-agagctatttataaggattaggagcagtaagtggtggggaacaagccctgtgtc 9050
Query: 686 ccgtttagctcaccaaacgtccagccggttccttcattttcttttataaccttgatctta 745
||||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||
Sbjct: 9049 ccgtttagctcaccaaacgtccagccgtttccttcatcttcctttaataccttgatctta 8990
Query: 746 tctccaacctgttaaggaaagttcatttggacccttagactggtattggataggcttgcg 805
||||||||||| |||||||||||||| |||||||| ||||||||| ||||||||| ||||
Sbjct: 8989 tctccaacctg-taaggaaagttcatctggaccctgagactggta-tggataggc-tgcg 8933
Query: 806 gtcattatcttttg 819
||||| |||||||
Sbjct: 8932 gtcatagtcttttg 8919
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5997
Number of Sequences: 1807
Number of extensions: 5997
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)