BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC29ZA07RM1.SCF screened BAC_end (914 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig640 1255 0.0 >3x_Contig640 Length = 3164 Score = 1255 bits (633), Expect = 0.0 Identities = 717/737 (97%), Gaps = 6/737 (0%) Strand = Plus / Minus Query: 44 aatgaaccca-tgtagaagcttgaacaacaacacctctaccagaagtatccacagagtct 102 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1145 aatgaacccaatgtagaagcttgaacaacaacacctctaccagaagtatccacagagtct 1086 Query: 103 aaaagaccagtcaaatcttccatgacgtcatccatcatttcttcttcatcatcgtctgga 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1085 aaaagaccagtcaaatcttccatgacgtcatccatcatttcttcttcatcatcgtctgga 1026 Query: 163 cctacaactaataatcgggaaccagaaacagccttttccaaatcatttgcagcaattttt 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1025 cctacaactaataatcgggaaccagaaacagccttttccaaatcatttgcagcaattttt 966 Query: 223 acacctagagcagccttgacttctttgtgatgttgatattcagacttcaaacgtaactca 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 965 acacctagagcagccttgacttctttgtgatgttgatattcagacttcaaacgtaactca 906 Query: 283 cgtaagggttgaggtgtcaacaaggctctgatattcgtcacaatcggaccgttcatacca 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 905 cgtaagggttgaggtgtcaacaaggctctgatattcgtcacaatcggaccgttcatacca 846 Query: 343 cataaaacgattctgtcaccctctcttaagtaaccattagatagaataacatcgatagtg 402 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 845 cataaaaagattctgtaaccctctcttaagtaaccattagatagaataacatcgatagtg 786 Query: 403 gtaccgaaaccttcaacaaccttcacttcaagaattgtagcttcaacgtgagacaaatat 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 785 gtaccgaaaccttcaacaaccttcacttcaagaattgtagcttcaacgtgagacaaatat 726 Query: 463 ttcaattgcttagacattcttcttttgagtcaattctaatagcaaccacaacaaatcagg 522 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 725 ttcaattgcttagacattc-tcttttgagtcaattctaatagcaaccacaacaaatcagg 667 Query: 523 aacaccttcacctgtaacggcagatgttggaacaatagagacgtatttggctaggttgtt 582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 666 aacaccttcacctgtaacggcagatgttggaacaatagagacgtatttggctaggttg-t 608 Query: 583 tgttttggaaatacaatttctgagtttcaaaccttgttcagcaagagcgactttgatgtt 642 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 607 tgttttggaaatacaa-ttctgag-ttcaaaccttgttcagcaagagcgactttgatgtt 550 Query: 643 gtcaagtctagtttggaactcttgctttactgctcgttcttgtttgtcaaaggaatctct 702 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct: 549 gtcaagtctagtttggaactcttgcttaactgctcgttcttgtttgtcaaaggagtctct 490 Query: 703 gaaaga-ttgttttttgttatttcccagtcgtacaatttatcgatcttttttcaagcaac 761 |||||| |||||| ||| ||| |||||||||||||| |||||||||| || | ||||| Sbjct: 489 gaaagagttgtttggtgtaattacccagtcgtacaatctatcgatcttattcaaggcaac 430 Query: 762 gatgaaaggaacctttc 778 |||||||||| |||||| Sbjct: 429 gatgaaaggagcctttc 413 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7891 Number of Sequences: 1807 Number of extensions: 7891 Number of successful extensions: 68 Number of sequences better than 1.0e-20: 1 length of query: 914 length of database: 10,358,551 effective HSP length: 16 effective length of query: 898 effective length of database: 10,329,639 effective search space: 9276015822 effective search space used: 9276015822 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)