BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZA07RM1.SCF screened BAC_end
         (914 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig640                                                         1255   0.0  

>3x_Contig640 
          Length = 3164

 Score = 1255 bits (633), Expect = 0.0
 Identities = 717/737 (97%), Gaps = 6/737 (0%)
 Strand = Plus / Minus

                                                                        
Query: 44   aatgaaccca-tgtagaagcttgaacaacaacacctctaccagaagtatccacagagtct 102
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 aatgaacccaatgtagaagcttgaacaacaacacctctaccagaagtatccacagagtct 1086

                                                                        
Query: 103  aaaagaccagtcaaatcttccatgacgtcatccatcatttcttcttcatcatcgtctgga 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 aaaagaccagtcaaatcttccatgacgtcatccatcatttcttcttcatcatcgtctgga 1026

                                                                        
Query: 163  cctacaactaataatcgggaaccagaaacagccttttccaaatcatttgcagcaattttt 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 cctacaactaataatcgggaaccagaaacagccttttccaaatcatttgcagcaattttt 966

                                                                        
Query: 223  acacctagagcagccttgacttctttgtgatgttgatattcagacttcaaacgtaactca 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965  acacctagagcagccttgacttctttgtgatgttgatattcagacttcaaacgtaactca 906

                                                                        
Query: 283  cgtaagggttgaggtgtcaacaaggctctgatattcgtcacaatcggaccgttcatacca 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905  cgtaagggttgaggtgtcaacaaggctctgatattcgtcacaatcggaccgttcatacca 846

                                                                        
Query: 343  cataaaacgattctgtcaccctctcttaagtaaccattagatagaataacatcgatagtg 402
            ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845  cataaaaagattctgtaaccctctcttaagtaaccattagatagaataacatcgatagtg 786

                                                                        
Query: 403  gtaccgaaaccttcaacaaccttcacttcaagaattgtagcttcaacgtgagacaaatat 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  gtaccgaaaccttcaacaaccttcacttcaagaattgtagcttcaacgtgagacaaatat 726

                                                                        
Query: 463  ttcaattgcttagacattcttcttttgagtcaattctaatagcaaccacaacaaatcagg 522
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 725  ttcaattgcttagacattc-tcttttgagtcaattctaatagcaaccacaacaaatcagg 667

                                                                        
Query: 523  aacaccttcacctgtaacggcagatgttggaacaatagagacgtatttggctaggttgtt 582
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 666  aacaccttcacctgtaacggcagatgttggaacaatagagacgtatttggctaggttg-t 608

                                                                        
Query: 583  tgttttggaaatacaatttctgagtttcaaaccttgttcagcaagagcgactttgatgtt 642
            |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 607  tgttttggaaatacaa-ttctgag-ttcaaaccttgttcagcaagagcgactttgatgtt 550

                                                                        
Query: 643  gtcaagtctagtttggaactcttgctttactgctcgttcttgtttgtcaaaggaatctct 702
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 549  gtcaagtctagtttggaactcttgcttaactgctcgttcttgtttgtcaaaggagtctct 490

                                                                        
Query: 703  gaaaga-ttgttttttgttatttcccagtcgtacaatttatcgatcttttttcaagcaac 761
            |||||| ||||||  ||| ||| |||||||||||||| |||||||||| ||  | |||||
Sbjct: 489  gaaagagttgtttggtgtaattacccagtcgtacaatctatcgatcttattcaaggcaac 430

                             
Query: 762  gatgaaaggaacctttc 778
            |||||||||| ||||||
Sbjct: 429  gatgaaaggagcctttc 413


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7891
Number of Sequences: 1807
Number of extensions: 7891
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)