BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZA08FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1407 0.0
3x_Contig56 327 2e-89
>3x_Contig1719
Length = 15804
Score = 1407 bits (710), Expect = 0.0
Identities = 793/814 (97%), Gaps = 5/814 (0%)
Strand = Plus / Minus
Query: 86 atagaagatgtgcagcagaagcagatgcaaaaacattgatacaaaatgaactcaaagatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2898 atagaagatgtgcagcagaagcagatgcaaaaacattgatacaaaatgaactcaaagatg 2839
Query: 146 caccaggtaacaggaagataggaaaatcactgtcacatactttatgggaaacttttggta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2838 caccaggtaacaggaagataggaaaatcactgtcacatactttatgggaaacttttggta 2779
Query: 206 aactgtgaactacattttataatacaatctcattatttaatgataatttctataaatgaa 265
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778 aactgtgaactacaaaa-ataatacaatctcattatttaatgataatttctataaatgaa 2720
Query: 266 gtggacatccacgccattttcgaacacttgacctatttcttcaagtgataaacctttcac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2719 gtggacatccacgccattttcgaacacttgacctatttcttcaagtgataaacctttcac 2660
Query: 326 ctccgggtaccaaatataaacgaacagccaattgaatatagtaaataaggcaaagagtag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 ctccgggtaccaaatataaacgaacagccaattgaatatagtaaataaggcaaagagtag 2600
Query: 386 catcgtattttcgtttccaatcctatctgtgatagttaaataagtcaaagacaacacaga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 catcgtattttcgtttccaatcctatctgtgatagttaaataagtcaaagacaacacaga 2540
Query: 446 gttagtcaaccaattagtacaggaaatcatagatccgcccacagctcttcggttcagggg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 gttagtcaaccaattagtacaggaaatcatagatccgcccacagctcttcggttcagggg 2480
Query: 506 taaaaattcgacactgctccacggtactactcccataccagtagcgtaagcaccaacata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 taaaaattcgacactgctccacggtactactcccataccagtagcgtaagcaccaacata 2420
Query: 566 aacaatcacagatacaaccaatagcgctaggttattcaattcgaaaccaacagaacataa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 aacaatcacagatacaaccaatagcgctaggttattcaattcgaaaccaacagaacataa 2360
Query: 626 taacaaacctactgtcataatccatatagtcatgagtagcaaggttctttttcccatcgt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 taacaaacctactgtcataatccatatagtcatgagtagcaaggttctttttcccatcgt 2300
Query: 686 gtcaatcaacttcattgctagtaaggtgaaagaaaaatttgtaaacgcaacgatgattgc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2299 gtcaatcaacttcattgctagtaaggtgaaagaaaaatttgtaaacgcaacgatgattgc 2240
Query: 746 ccgaacttaaggatgggtaaatcctacttgctcgaaaatggttgcggaataatacatgaa 805
| ||||| |||||| |||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 2239 cggaactaaaggattggtaaatcctacttgctcgaaaatcgttgcggaataatacatg-a 2181
Query: 806 atgcgttg-agccacttgtcttgttg-aaaaacatttacccacagccatggattaaggct 863
|||||||| ||||||||||| ||||| ||||||||| || |||||||| ||||||||||
Sbjct: 2180 atgcgttgaagccacttgtc-tgttgaaaaaacattaacacacagccaatgattaaggct 2122
Query: 864 cgtttaactttttcctcccatatatgcctttttt 897
|||||| |||| |||||||| |||| |||||||
Sbjct: 2121 cgtttactttttccctcccatctatgtctttttt 2088
>3x_Contig56
Length = 1175
Score = 327 bits (165), Expect = 2e-89
Identities = 188/193 (97%), Gaps = 2/193 (1%)
Strand = Plus / Minus
Query: 86 atagaagatgtgcagcagaagcagatgcaaaaacattgatacaaaatgaactcaaagatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagaagatgtgcagcagaagcagatgcaaaaacattgatacaaaatgaactcaaagatg 142
Query: 146 caccaggtaacaggaagataggaaaatcactgtcacatactttatgggaaacttttggta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 caccaggtaacaggaagataggaaaatcactgtcacatactttatgggaaacttttggta 82
Query: 206 aactgtgaactacattttataatacaatctcattatttaatgataatttctataaatgaa 265
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 aactgtgaactaca-aaaataatacaatctcattatttaatgataatttctataaatgaa 23
Query: 266 gtggacatccacg 278
|| ||||||||||
Sbjct: 22 gt-gacatccacg 11
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6451
Number of Sequences: 1807
Number of extensions: 6451
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 2
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)